Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Endoplasmin-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3606 g3606.t8 isoform g3606.t8 26727785 26728757
chr_3 g3606 g3606.t8 exon g3606.t8.exon1 26727785 26727799
chr_3 g3606 g3606.t8 cds g3606.t8.CDS1 26727786 26727799
chr_3 g3606 g3606.t8 exon g3606.t8.exon2 26727861 26727983
chr_3 g3606 g3606.t8 cds g3606.t8.CDS2 26727861 26727983
chr_3 g3606 g3606.t8 exon g3606.t8.exon3 26728049 26728283
chr_3 g3606 g3606.t8 cds g3606.t8.CDS3 26728049 26728247
chr_3 g3606 g3606.t8 exon g3606.t8.exon4 26728428 26728608
chr_3 g3606 g3606.t8 exon g3606.t8.exon5 26728706 26728757
chr_3 g3606 g3606.t8 TSS g3606.t8 26728851 26728851
chr_3 g3606 g3606.t8 TTS g3606.t8 NA NA

Sequences

>g3606.t8 Gene=g3606 Length=606
ATGAAGTATTTATTAGCCACGACTCTTGGCATAGTACTATTGATTTCTACAGAATTCATT
TAAAAGGCATCCTTGTTAGTGGATCAAAAGATCAAGATGGTGTGGACGATGTTAAAATAG
ATGCTACACTTAAGACATCAACTGGTACAGATTCGGAAACATTAAAGCGTGAAGAAGAAT
CAATTAATATTGATGGCTTGAGTCAGAAAGAACTTAAAGATTTAAGAGACAAGGCTGAAA
AACACACTTTCCAAGCTGAAGTTAATCGAATGATGAAACTTATCATTAATTCACTTTACA
AAAATAAAGAAATTTTCTTGCGTGAATTAATATCCAATGCGAGTGATGCTCTCGATAAAA
TTCGTTTGATGTCTTTGACAGACCGCGCACAATTGGAAACCAATACGGATTTGATTATTC
GAGTTAAAACTGATAAGGAAAATCGTGTTCTACATATCATTGATACTGGAATCGGAATGA
CTCACGATGACTTAATCAACAATCTTGGTACAATTGCAAAATCTGGAACAGCTGATTTCT
TATCGAAGGTACAAGAAAATGAAAATGGTCAAGATGCTAATGATATGATCGGTCAATTTG
GTGTTG

>g3606.t8 Gene=g3606 Length=112
MMKLIINSLYKNKEIFLRELISNASDALDKIRLMSLTDRAQLETNTDLIIRVKTDKENRV
LHIIDTGIGMTHDDLINNLGTIAKSGTADFLSKVQENENGQDANDMIGQFGV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3606.t8 Gene3D G3DSA:3.30.565.10 - 1 112 2.0E-40
2 g3606.t8 PANTHER PTHR11528:SF97 ENDOPLASMIN 1 112 5.0E-45
3 g3606.t8 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 112 5.0E-45
5 g3606.t8 PRINTS PR00775 90kDa heat shock protein signature 11 33 8.0E-33
7 g3606.t8 PRINTS PR00775 90kDa heat shock protein signature 60 77 8.0E-33
6 g3606.t8 PRINTS PR00775 90kDa heat shock protein signature 78 95 8.0E-33
4 g3606.t8 PRINTS PR00775 90kDa heat shock protein signature 107 112 8.0E-33
1 g3606.t8 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 12 99 4.5E-9
9 g3606.t8 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 10 19 -
8 g3606.t8 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2 112 2.01E-34

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values