Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Endoplasmin.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3606 g3606.t9 isoform g3606.t9 26728052 26728757
chr_3 g3606 g3606.t9 exon g3606.t9.exon1 26728052 26728283
chr_3 g3606 g3606.t9 cds g3606.t9.CDS1 26728053 26728283
chr_3 g3606 g3606.t9 exon g3606.t9.exon2 26728428 26728594
chr_3 g3606 g3606.t9 cds g3606.t9.CDS2 26728428 26728594
chr_3 g3606 g3606.t9 exon g3606.t9.exon3 26728706 26728757
chr_3 g3606 g3606.t9 cds g3606.t9.CDS3 26728706 26728757
chr_3 g3606 g3606.t9 TSS g3606.t9 26728851 26728851
chr_3 g3606 g3606.t9 TTS g3606.t9 NA NA

Sequences

>g3606.t9 Gene=g3606 Length=451
ATGAAGTATTTATTAGCCACGACTCTTGGCATAGTACTATTGATTTCTACAGGCATCCTT
GTTAGTGGATCAAAAGATCAAGATGGTGTGGACGATGTTAAAATAGATGCTACACTTAAG
ACATCAACTGGTACAGATTCGGAAACATTAAAGCGTGAAGAAGAATCAATTAATATTGAT
GGCTTGAGTCAGAAAGAACTTAAAGATTTAAGAGACAAGGCTGAAAAACACACTTTCCAA
GCTGAAGTTAATCGAATGATGAAACTTATCATTAATTCACTTTACAAAAATAAAGAAATT
TTCTTGCGTGAATTAATATCCAATGCGAGTGATGCTCTCGATAAAATTCGTTTGATGTCT
TTGACAGACCGCGCACAATTGGAAACCAATACGGATTTGATTATTCGAGTTAAAACTGAT
AAGGAAAATCGTGTTCTACATATCATTGATA

>g3606.t9 Gene=g3606 Length=150
MKYLLATTLGIVLLISTGILVSGSKDQDGVDDVKIDATLKTSTGTDSETLKREEESINID
GLSQKELKDLRDKAEKHTFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLMS
LTDRAQLETNTDLIIRVKTDKENRVLHIID

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g3606.t9 Gene3D G3DSA:3.30.565.10 - 60 150 6.2E-26
1 g3606.t9 PANTHER PTHR11528:SF96 ENDOPLASMIN 42 150 6.0E-41
2 g3606.t9 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 42 150 6.0E-41
5 g3606.t9 PRINTS PR00775 90kDa heat shock protein signature 75 95 4.5E-20
3 g3606.t9 PRINTS PR00775 90kDa heat shock protein signature 96 118 4.5E-20
4 g3606.t9 PRINTS PR00775 90kDa heat shock protein signature 145 150 4.5E-20
11 g3606.t9 Phobius SIGNAL_PEPTIDE Signal peptide region 1 23 -
12 g3606.t9 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
13 g3606.t9 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 15 -
14 g3606.t9 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 23 -
10 g3606.t9 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 24 150 -
7 g3606.t9 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 95 104 -
6 g3606.t9 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 75 150 2.18E-21
8 g3606.t9 SignalP_EUK SignalP-noTM SignalP-noTM 1 23 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed