General information for g363.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Forkhead box protein O.
Parent gene
- The parent gene g363 is located on chr_3: 2992141..2995776 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g363 | g363.t3 | isoform | g363.t3 | 2992141 | 2995776 |
| chr_3 | g363 | g363.t3 | exon | g363.t3.exon1 | 2992141 | 2992354 |
| chr_3 | g363 | g363.t3 | cds | g363.t3.CDS1 | 2992180 | 2992354 |
| chr_3 | g363 | g363.t3 | exon | g363.t3.exon2 | 2992416 | 2992506 |
| chr_3 | g363 | g363.t3 | cds | g363.t3.CDS2 | 2992416 | 2992506 |
| chr_3 | g363 | g363.t3 | exon | g363.t3.exon3 | 2993958 | 2994179 |
| chr_3 | g363 | g363.t3 | cds | g363.t3.CDS3 | 2993958 | 2994179 |
| chr_3 | g363 | g363.t3 | exon | g363.t3.exon4 | 2994505 | 2994658 |
| chr_3 | g363 | g363.t3 | cds | g363.t3.CDS4 | 2994505 | 2994658 |
| chr_3 | g363 | g363.t3 | exon | g363.t3.exon5 | 2995174 | 2995333 |
| chr_3 | g363 | g363.t3 | cds | g363.t3.CDS5 | 2995174 | 2995333 |
| chr_3 | g363 | g363.t3 | exon | g363.t3.exon6 | 2995403 | 2995524 |
| chr_3 | g363 | g363.t3 | cds | g363.t3.CDS6 | 2995403 | 2995524 |
| chr_3 | g363 | g363.t3 | exon | g363.t3.exon7 | 2995615 | 2995776 |
| chr_3 | g363 | g363.t3 | cds | g363.t3.CDS7 | 2995615 | 2995776 |
| chr_3 | g363 | g363.t3 | TTS | g363.t3 | 2996509 | 2996509 |
| chr_3 | g363 | g363.t3 | TSS | g363.t3 | NA | NA |
Sequences
>g363.t3 Gene=g363 Length=1125
AACTCAATTCGTCACAATTTGTCACTGCACAATCGATTTATGAGAGTACAAAATGAGGGA
ACAGGCAAATCATCTTGGTGGATGCTTAATCCTGATGCTAAGCCTGGTAAATCAGTCAGA
AGACGAGCAGCATCCATGGAAACATCAAAGTTTGAGAAAAGACGTGGGCGAGTTAAGAAA
CGCGTTGAGCAGATAAGAAATGGAGTGATAACAAATGTTTCTGGTGTGCTAAATGATGTC
AATTCATCACCTGGCAGCAGTGTGAGCGAAGGATTGGATCTTTTTCCAGAAAGTCCCTTG
CATAGTGCAAATTTCCAATTGTCACCGGACTTTCGACAAAGAGCGAGCTCAAATGCGAGT
TCAGTGGGAAGACTGAGTCCAATTCCATCATTGGCAATTGAAAATGAATGGGATTGTTTT
GCTGAAACAGACACTGTCAATGGTAATGGTGCACCGAATCCAATTCTCGAAGACTTAGCT
GGATCACTTGCGGATGAGTTGACATTACAAAATGATTTATTTAATGGGTTCACAACAGCG
AGTCTACATCATCCACAACCACCTCCACCATACCAACCACCACAATATTCAACAATGCAC
ACAACAATGCCAGCTACAGTGACATATGGATTGAAACAGCCAGCACAAGCAATTCACATG
CTACAGAATAATACACGAGAGAGTATGTCACCTGGATCAGCAACAGGAATGTCACCAGCA
TACAGTGAACCATCTCCCGACTATTCGATGCTCGTCAGTCAAAATCGACTACCGAGACCT
TCATCAAACAGTCCGCCCCTAAATAATCTGCAAACTCTTACCACAACCCCACATATCGGA
CATAACACACCTTCCACTCTAATGGGTCAATTCATTGAAGTTCTCAACAATCAAGCGAAC
CTCGATGACTTGAATTTGAATTTGGAGTCATTTCAAGGTGGTTTGGATTGCAATGTCGAT
GAAGTAATAAAACACGAACTCAGTTATGGTCCGTTAGATTTTAACTTTCAAAATAACAAT
CAAGATGTTATGGATGGAAGTGATGCACAACAACAGCATCCAACAGCTAACCACAATCAT
GGTCAGTATCAGCCAGCGAGAACAACCAATTCGTGGGTTCATTAA
>g363.t3 Gene=g363 Length=361
MRVQNEGTGKSSWWMLNPDAKPGKSVRRRAASMETSKFEKRRGRVKKRVEQIRNGVITNV
SGVLNDVNSSPGSSVSEGLDLFPESPLHSANFQLSPDFRQRASSNASSVGRLSPIPSLAI
ENEWDCFAETDTVNGNGAPNPILEDLAGSLADELTLQNDLFNGFTTASLHHPQPPPPYQP
PQYSTMHTTMPATVTYGLKQPAQAIHMLQNNTRESMSPGSATGMSPAYSEPSPDYSMLVS
QNRLPRPSSNSPPLNNLQTLTTTPHIGHNTPSTLMGQFIEVLNNQANLDDLNLNLESFQG
GLDCNVDEVIKHELSYGPLDFNFQNNNQDVMDGSDAQQQHPTANHNHGQYQPARTTNSWV
H
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g363.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - |
| 7 | g363.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 40 | - |
| 4 | g363.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 234 | - |
| 5 | g363.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 361 | - |
| 2 | g363.t3 | PANTHER | PTHR45767 | FORKHEAD BOX PROTEIN O | 1 | 361 | 2.4E-53 |
| 3 | g363.t3 | PANTHER | PTHR45767:SF2 | FORKHEAD BOX PROTEIN O | 1 | 361 | 2.4E-53 |
| 1 | g363.t3 | Pfam | PF16676 | Transactivation domain of FOXO protein family | 290 | 324 | 1.8E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
