General information for g3679.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Elongation of very long chain fatty acids protein AAEL008004.
Parent gene
- The parent gene g3679 is located on chr_3: 27379633..27389070 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3679 | g3679.t16 | TSS | g3679.t16 | 27378040 | 27378040 |
| chr_3 | g3679 | g3679.t16 | isoform | g3679.t16 | 27378198 | 27380139 |
| chr_3 | g3679 | g3679.t16 | exon | g3679.t16.exon1 | 27378198 | 27378520 |
| chr_3 | g3679 | g3679.t16 | exon | g3679.t16.exon2 | 27378591 | 27378675 |
| chr_3 | g3679 | g3679.t16 | exon | g3679.t16.exon3 | 27379013 | 27379312 |
| chr_3 | g3679 | g3679.t16 | cds | g3679.t16.CDS1 | 27379136 | 27379312 |
| chr_3 | g3679 | g3679.t16 | exon | g3679.t16.exon4 | 27379402 | 27379533 |
| chr_3 | g3679 | g3679.t16 | cds | g3679.t16.CDS2 | 27379402 | 27379533 |
| chr_3 | g3679 | g3679.t16 | exon | g3679.t16.exon5 | 27379600 | 27380139 |
| chr_3 | g3679 | g3679.t16 | cds | g3679.t16.CDS3 | 27379600 | 27379743 |
| chr_3 | g3679 | g3679.t16 | TTS | g3679.t16 | 27380148 | 27380148 |
Sequences
>g3679.t16 Gene=g3679 Length=1380
ATGGATAATAGTACAACGAGCGCTATAGCAAAATATTGGGACTATTTGTTTGTTAAGTTG
GCAGGTGTGTATAAGAAAAATGATTATGGAAATTTTCTTGTTCAAGACTAATATGATGTT
CTTTTACTGTAGATGAGCGAACAAATGAATGGCCATTGATTAAATCACCGTTCCCAGGTC
TCACAATTATTGCACTTTATCTATACTTCGTAAATGTGGCTGGACCACGATTTATGAAGG
ATCGTAAACCTTTTCAAATGAAGAAAACCTTAATTGTGTATAATTTCCTGCAAGTACTTG
TCAGTGTATATCTTTTCGTAGAGGGCATGAATGGTGGATGGCTTAGACACTACTCTTGGA
GATGTCAACCTGTAGACACATCCAGAAGTGAATTTGGAATGAGAGTAAGAAGCACGCGGC
TGCTATGTATATTTCATTGCCAAACTTACTGAACTCTTGGACACAATTTTCTTTGTACTT
CGAAAAAAAGATAATCAGGTGTCTTTTCTGCATCTGTATCATCACACAGTAATGCCCATG
ATTTCATGGGGTTGTACTAAGTATTTCCCTGGCGGCCATGGTACTTTTATCGGCGTAATT
AACTCTTTTGTTCATATTGTTATGTACTTTTACTATATGATGGCTGCTATGGGACCTGAA
TTCCATAAATATTTATGGTGGAAACATTGGATCACTAACTTACAAATGATTCAATTCGGT
ATGGCTTTCTTGCACTCTGCTCAATTATTATACACAGATTGCGGTTATCCACGCTGGTCT
GTCTGCTTCACACTGCCAAATGCTATCTTTTTCTACATGCTCTTTAACGATTTTTACAAG
AAATCATATACGAAGAAAGGTAAGGGAAAGAAGGTTGCAAATGGAAAAATTAAGCAAGCA
AATGGCAAAACAAACGGTCACATTGTACATGATATCAATCACAACGAAACAAAGCCTGAT
GAGGATAAAAGAAAAAGTGAATAGAATTCAAGTTTCAATATAAAGAAGAACAAAATATTT
CATATGAGATGATTACTGTTTAATAAATAGTAACACAAAGTTTTCTTGCTTTATTTGAAA
ATGATTTATATTTACTACATGTAGTGTTAAAGTACCGACTCTTTTTCAAAATCTAAAGAA
AATTTTTTAGGAAGAATTCTAAAAATCTTATCTATCTACCTGCATATATACTCCTCTACT
TATTTTTAATAAACTATAGTAAAATAAGAATTGAAAATTTGTTCTTCAGTGCTATTGAAC
GCGTGTGATTACTATTAATCATGAAAAAACTTTCTACCCTAAGTGACTAAAATAGTAATT
TAAATGATATTCTGTTGTGTGTATTTGTTTTGAATGTGCAATAAACTTTCATCAATCAAC
>g3679.t16 Gene=g3679 Length=150
MPMISWGCTKYFPGGHGTFIGVINSFVHIVMYFYYMMAAMGPEFHKYLWWKHWITNLQMI
QFGMAFLHSAQLLYTDCGYPRWSVCFTLPNAIFFYMLFNDFYKKSYTKKGKGKKVANGKI
KQANGKTNGHIVHDINHNETKPDEDKRKSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g3679.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 150 | - |
| 7 | g3679.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 150 | - |
| 2 | g3679.t16 | PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED | 1 | 114 | 5.0E-65 |
| 3 | g3679.t16 | PANTHER | PTHR11157:SF153 | ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN | 1 | 114 | 5.0E-65 |
| 1 | g3679.t16 | Pfam | PF01151 | GNS1/SUR4 family | 1 | 113 | 5.5E-27 |
| 11 | g3679.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 15 | g3679.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 35 | - |
| 10 | g3679.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 36 | 46 | - |
| 13 | g3679.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 67 | - |
| 12 | g3679.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 68 | 78 | - |
| 14 | g3679.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 98 | - |
| 9 | g3679.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 99 | 150 | - |
| 6 | g3679.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 15 | 34 | - |
| 5 | g3679.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 69 | - |
| 4 | g3679.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 98 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed