Gene loci information

Transcript annotation

  • This transcript has been annotated as Elongation of very long chain fatty acids protein AAEL008004.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3679 g3679.t18 TSS g3679.t18 27378040 27378040
chr_3 g3679 g3679.t18 isoform g3679.t18 27378198 27389070
chr_3 g3679 g3679.t18 exon g3679.t18.exon1 27378198 27378261
chr_3 g3679 g3679.t18 cds g3679.t18.CDS1 27378198 27378261
chr_3 g3679 g3679.t18 exon g3679.t18.exon2 27378330 27378520
chr_3 g3679 g3679.t18 cds g3679.t18.CDS2 27378330 27378520
chr_3 g3679 g3679.t18 exon g3679.t18.exon3 27378591 27378671
chr_3 g3679 g3679.t18 cds g3679.t18.CDS3 27378591 27378671
chr_3 g3679 g3679.t18 exon g3679.t18.exon4 27379013 27379312
chr_3 g3679 g3679.t18 cds g3679.t18.CDS4 27379013 27379312
chr_3 g3679 g3679.t18 exon g3679.t18.exon5 27379402 27379533
chr_3 g3679 g3679.t18 cds g3679.t18.CDS5 27379402 27379533
chr_3 g3679 g3679.t18 exon g3679.t18.exon6 27379600 27380486
chr_3 g3679 g3679.t18 cds g3679.t18.CDS6 27379600 27379743
chr_3 g3679 g3679.t18 exon g3679.t18.exon7 27389053 27389070
chr_3 g3679 g3679.t18 TTS g3679.t18 NA NA

Sequences

>g3679.t18 Gene=g3679 Length=1673
ATGGATAATAGTACAACGAGCGCTATAGCAAAATATTGGGACTATTTGTTTGTTAAGTTG
GCAGATGAGCGAACAAATGAATGGCCATTGATTAAATCACCGTTCCCAGGTCTCACAATT
ATTGCACTTTATCTATACTTCGTAAATGTGGCTGGACCACGATTTATGAAGGATCGTAAA
CCTTTTCAAATGAAGAAAACCTTAATTGTGTATAATTTCCTGCAAGTACTTGTCAGTGTA
TATCTTTTCGTAGAGGGCATGAATGGTGGATGGCTTAGACACTACTCTTGGAGATGTCAA
CCTGTAGACACATCCAGAAGTGAATTTGGAATGAGAGAAGCACGCGGCTGCTATGTATAT
TTCATTGCCAAACTTACTGAACTCTTGGACACAATTTTCTTTGTACTTCGAAAAAAAGAT
AATCAGGTGTCTTTTCTGCATCTGTATCATCACACAGTAATGCCCATGATTTCATGGGGT
TGTACTAAGTATTTCCCTGGCGGCCATGGTACTTTTATCGGCGTAATTAACTCTTTTGTT
CATATTGTTATGTACTTTTACTATATGATGGCTGCTATGGGACCTGAATTCCATAAATAT
TTATGGTGGAAACATTGGATCACTAACTTACAAATGATTCAATTCGGTATGGCTTTCTTG
CACTCTGCTCAATTATTATACACAGATTGCGGTTATCCACGCTGGTCTGTCTGCTTCACA
CTGCCAAATGCTATCTTTTTCTACATGCTCTTTAACGATTTTTACAAGAAATCATATACG
AAGAAAGGTAAGGGAAAGAAGGTTGCAAATGGAAAAATTAAGCAAGCAAATGGCAAAACA
AACGGTCACATTGTACATGATATCAATCACAACGAAACAAAGCCTGATGAGGATAAAAGA
AAAAGTGAATAGAATTCAAGTTTCAATATAAAGAAGAACAAAATATTTCATATGAGATGA
TTACTGTTTAATAAATAGTAACACAAAGTTTTCTTGCTTTATTTGAAAATGATTTATATT
TACTACATGTAGTGTTAAAGTACCGACTCTTTTTCAAAATCTAAAGAAAATTTTTTAGGA
AGAATTCTAAAAATCTTATCTATCTACCTGCATATATACTCCTCTACTTATTTTTAATAA
ACTATAGTAAAATAAGAATTGAAAATTTGTTCTTCAGTGCTATTGAACGCGTGTGATTAC
TATTAATCATGAAAAAACTTTCTACCCTAAGTGACTAAAATAGTAATTTAAATGATATTC
TGTTGTGTGTATTTGTTTTGAATGTGCAATAAACTTTCATCAATCAACTAATTATTTATT
ATATCAAATTTAAAATGATAACTTTTATAAGTTCAATTATCATTCTTCAATTTTATTTAA
TAGAAAATTTTTCTTAAAAGTTTAAAGTGCAAATCGATTTCTTGTTTTCGCCGACTTGTT
TTACCAGAATTTTTTAAAAGTTTAGATTTCTTTCTTACCGTAATATGTTTGTATCTGTTC
TTGATTATAAACATACATATTGTATTATCATATTTAGTATCTTTCAAAAAGAATGCCTTT
AAGATTAAACTTTTACTTAAAAATTTGTTCAACAAATAAACTATCGATGAATAAGACAAT
TTTCTGACATTTCTCAGAGAATAAGAAATAAAACTTTTAAAAATAAAAATCTT

>g3679.t18 Gene=g3679 Length=303
MDNSTTSAIAKYWDYLFVKLADERTNEWPLIKSPFPGLTIIALYLYFVNVAGPRFMKDRK
PFQMKKTLIVYNFLQVLVSVYLFVEGMNGGWLRHYSWRCQPVDTSRSEFGMREARGCYVY
FIAKLTELLDTIFFVLRKKDNQVSFLHLYHHTVMPMISWGCTKYFPGGHGTFIGVINSFV
HIVMYFYYMMAAMGPEFHKYLWWKHWITNLQMIQFGMAFLHSAQLLYTDCGYPRWSVCFT
LPNAIFFYMLFNDFYKKSYTKKGKGKKVANGKIKQANGKTNGHIVHDINHNETKPDEDKR
KSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3679.t18 MobiDBLite mobidb-lite consensus disorder prediction 284 303 -
9 g3679.t18 MobiDBLite mobidb-lite consensus disorder prediction 285 303 -
2 g3679.t18 PANTHER PTHR11157 FATTY ACID ACYL TRANSFERASE-RELATED 8 267 6.0E-146
3 g3679.t18 PANTHER PTHR11157:SF153 ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 8 267 6.0E-146
1 g3679.t18 Pfam PF01151 GNS1/SUR4 family 30 266 2.0E-64
17 g3679.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 34 -
20 g3679.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 56 -
14 g3679.t18 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 57 67 -
19 g3679.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 68 84 -
15 g3679.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 85 117 -
25 g3679.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 118 136 -
12 g3679.t18 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 137 147 -
24 g3679.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 148 165 -
18 g3679.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 166 170 -
23 g3679.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 171 188 -
13 g3679.t18 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 189 199 -
22 g3679.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 200 220 -
16 g3679.t18 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 221 231 -
21 g3679.t18 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 232 251 -
11 g3679.t18 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 252 303 -
8 g3679.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 56 -
7 g3679.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 68 87 -
6 g3679.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 165 187 -
4 g3679.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 200 222 -
5 g3679.t18 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 232 251 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed