Gene loci information

Transcript annotation

  • This transcript has been annotated as Elongation of very long chain fatty acids protein AAEL008004.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3679 g3679.t7 isoform g3679.t7 27378026 27380139
chr_3 g3679 g3679.t7 exon g3679.t7.exon1 27378026 27378261
chr_3 g3679 g3679.t7 TSS g3679.t7 27378040 27378040
chr_3 g3679 g3679.t7 cds g3679.t7.CDS1 27378198 27378261
chr_3 g3679 g3679.t7 exon g3679.t7.exon2 27378330 27378514
chr_3 g3679 g3679.t7 cds g3679.t7.CDS2 27378330 27378514
chr_3 g3679 g3679.t7 exon g3679.t7.exon3 27378591 27378671
chr_3 g3679 g3679.t7 cds g3679.t7.CDS3 27378591 27378671
chr_3 g3679 g3679.t7 exon g3679.t7.exon4 27379013 27379312
chr_3 g3679 g3679.t7 cds g3679.t7.CDS4 27379013 27379312
chr_3 g3679 g3679.t7 exon g3679.t7.exon5 27379402 27379533
chr_3 g3679 g3679.t7 cds g3679.t7.CDS5 27379402 27379533
chr_3 g3679 g3679.t7 exon g3679.t7.exon6 27379600 27380139
chr_3 g3679 g3679.t7 cds g3679.t7.CDS6 27379600 27379743
chr_3 g3679 g3679.t7 TTS g3679.t7 27380148 27380148

Sequences

>g3679.t7 Gene=g3679 Length=1474
GATTAACTTCAACCATCGTTGAGTGTGGACTTGTAAAATAAAAAAAGGATCATCGTGCAT
GTGTGTTCATATTCAACGACTGTTGCATATCTTCATAGATAAATAAAATAAGAACAAAAT
TTACAAATAAGCAGATTCAAAGGATAATACATAAATAAATAAAAAAAGAAAAATGGATAA
TAGTACAACGAGCGCTATAGCAAAATATTGGGACTATTTGTTTGTTAAGTTGGCAGATGA
GCGAACAAATGAATGGCCATTGATTAAATCACCGTTCCCAGGTCTCACAATTATTGCACT
TTATCTATACTTCGTAAATGTGGCTGGACCACGATTTATGAAGGATCGTAAACCTTTTCA
AATGAAGAAAACCTTAATTGTGTATAATTTCCTGCAAGTACTTGTCAGTGTATATCTTTT
CGGCATGAATGGTGGATGGCTTAGACACTACTCTTGGAGATGTCAACCTGTAGACACATC
CAGAAGTGAATTTGGAATGAGAGAAGCACGCGGCTGCTATGTATATTTCATTGCCAAACT
TACTGAACTCTTGGACACAATTTTCTTTGTACTTCGAAAAAAAGATAATCAGGTGTCTTT
TCTGCATCTGTATCATCACACAGTAATGCCCATGATTTCATGGGGTTGTACTAAGTATTT
CCCTGGCGGCCATGGTACTTTTATCGGCGTAATTAACTCTTTTGTTCATATTGTTATGTA
CTTTTACTATATGATGGCTGCTATGGGACCTGAATTCCATAAATATTTATGGTGGAAACA
TTGGATCACTAACTTACAAATGATTCAATTCGGTATGGCTTTCTTGCACTCTGCTCAATT
ATTATACACAGATTGCGGTTATCCACGCTGGTCTGTCTGCTTCACACTGCCAAATGCTAT
CTTTTTCTACATGCTCTTTAACGATTTTTACAAGAAATCATATACGAAGAAAGGTAAGGG
AAAGAAGGTTGCAAATGGAAAAATTAAGCAAGCAAATGGCAAAACAAACGGTCACATTGT
ACATGATATCAATCACAACGAAACAAAGCCTGATGAGGATAAAAGAAAAAGTGAATAGAA
TTCAAGTTTCAATATAAAGAAGAACAAAATATTTCATATGAGATGATTACTGTTTAATAA
ATAGTAACACAAAGTTTTCTTGCTTTATTTGAAAATGATTTATATTTACTACATGTAGTG
TTAAAGTACCGACTCTTTTTCAAAATCTAAAGAAAATTTTTTAGGAAGAATTCTAAAAAT
CTTATCTATCTACCTGCATATATACTCCTCTACTTATTTTTAATAAACTATAGTAAAATA
AGAATTGAAAATTTGTTCTTCAGTGCTATTGAACGCGTGTGATTACTATTAATCATGAAA
AAACTTTCTACCCTAAGTGACTAAAATAGTAATTTAAATGATATTCTGTTGTGTGTATTT
GTTTTGAATGTGCAATAAACTTTCATCAATCAAC

>g3679.t7 Gene=g3679 Length=301
MDNSTTSAIAKYWDYLFVKLADERTNEWPLIKSPFPGLTIIALYLYFVNVAGPRFMKDRK
PFQMKKTLIVYNFLQVLVSVYLFGMNGGWLRHYSWRCQPVDTSRSEFGMREARGCYVYFI
AKLTELLDTIFFVLRKKDNQVSFLHLYHHTVMPMISWGCTKYFPGGHGTFIGVINSFVHI
VMYFYYMMAAMGPEFHKYLWWKHWITNLQMIQFGMAFLHSAQLLYTDCGYPRWSVCFTLP
NAIFFYMLFNDFYKKSYTKKGKGKKVANGKIKQANGKTNGHIVHDINHNETKPDEDKRKS
E

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3679.t7 MobiDBLite mobidb-lite consensus disorder prediction 282 301 -
9 g3679.t7 MobiDBLite mobidb-lite consensus disorder prediction 283 301 -
2 g3679.t7 PANTHER PTHR11157 FATTY ACID ACYL TRANSFERASE-RELATED 8 265 1.4E-142
3 g3679.t7 PANTHER PTHR11157:SF153 ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN 8 265 1.4E-142
1 g3679.t7 Pfam PF01151 GNS1/SUR4 family 30 264 2.7E-62
16 g3679.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 34 -
21 g3679.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 56 -
13 g3679.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 57 67 -
25 g3679.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 68 85 -
15 g3679.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 86 115 -
24 g3679.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 116 134 -
12 g3679.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 135 145 -
23 g3679.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 146 163 -
17 g3679.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 164 168 -
22 g3679.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 169 186 -
11 g3679.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 187 197 -
20 g3679.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 198 218 -
18 g3679.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 219 229 -
19 g3679.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 230 249 -
14 g3679.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 250 301 -
8 g3679.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 34 56 -
6 g3679.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 68 90 -
7 g3679.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 163 185 -
5 g3679.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 198 220 -
4 g3679.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 230 249 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed