General information for g3682.t80
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Elongation of very long chain fatty acids protein 7.
Parent gene
- The parent gene g3682 is located on chr_3: 27395647..27397427 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3682 | g3682.t80 | TTS | g3682.t80 | 27394498 | 27394498 |
| chr_3 | g3682 | g3682.t80 | isoform | g3682.t80 | 27394647 | 27395770 |
| chr_3 | g3682 | g3682.t80 | exon | g3682.t80.exon1 | 27394647 | 27394892 |
| chr_3 | g3682 | g3682.t80 | exon | g3682.t80.exon2 | 27394946 | 27395113 |
| chr_3 | g3682 | g3682.t80 | cds | g3682.t80.CDS1 | 27395103 | 27395113 |
| chr_3 | g3682 | g3682.t80 | exon | g3682.t80.exon3 | 27395261 | 27395653 |
| chr_3 | g3682 | g3682.t80 | cds | g3682.t80.CDS2 | 27395261 | 27395653 |
| chr_3 | g3682 | g3682.t80 | exon | g3682.t80.exon4 | 27395710 | 27395770 |
| chr_3 | g3682 | g3682.t80 | cds | g3682.t80.CDS3 | 27395710 | 27395770 |
| chr_3 | g3682 | g3682.t80 | TSS | g3682.t80 | 27395811 | 27395811 |
Sequences
>g3682.t80 Gene=g3682 Length=868
ATGGCTTTAGTGATAAGACATGCTTTAGAAATTTATGGTGTTTTAAATAATGAATTAGAT
GATAAACGAGTTAAAAATTGGTTGTTCATGGCAAATCCGTTCAAACCAATTGCAATAATC
GGTATATATTTAATATTTGTTCTAAAATGGGGACCAAAGTTAATGGAAAATCGTCAATCA
TTCAAATTGGATAAAATAATAAAAATTTACAATCTTACGCAAGTTGTTATGTGTGCATTT
ATCACATTCGAAGCATTTAGGTACACATTTGCACGTGGTTATAGTATTTTTTGTCAACCT
GTTGATTATTCTATGGAGCCAGCTGCCTATAGAATCGCACAACTTGCTCATTACTATTTT
CTAACAAAAGTTCTTGATCTCATCGATACAGTTTTCTTTGTACTGAAAAAGAAAAATTCT
CATGTCTCTTTTCTTCATGTCTATCACCATGCTGAAACTTTTTGAAATAGGTACAAAATA
TTTTGCTGGTGGACATTCAGTTTTTACAGGCTGGATTAATTCTCTAGTTCATGTCATTAT
GTACTTTTATTACTTCCTAACAACAGTTGATAACAAATACAAGCAAAGTTTTTGGAAAAA
ATACATAACACAACTTCAAATGATACAATTTGGTATGATGGCATTGCACTGGTTATTTTT
GCTCCAATCCAAAGATTGTGGATTCCCAAAATTTATTTCTTTCTTTATGTTACCTCAAAA
TGCTTTTATTTTCATTCTTTTCTATGACTTTTATAGAAAAGCTTATGGTAATAAGAAAAA
AACAAGTGAAGAAGAAATTTCAATAAAAAAGCCAGAATTGAATAATAATATTGACCTCTC
AAATGTAAAAAATGGAAAATCATATTAA
>g3682.t80 Gene=g3682 Length=154
MALVIRHALEIYGVLNNELDDKRVKNWLFMANPFKPIAIIGIYLIFVLKWGPKLMENRQS
FKLDKIIKIYNLTQVVMCAFITFEAFRYTFARGYSIFCQPVDYSMEPAAYRIAQLAHYYF
LTKVLDLIDTVFFVLKKKNSHVSFLHVYHHAETF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3682.t80 | PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED | 3 | 151 | 1.0E-49 |
| 3 | g3682.t80 | PANTHER | PTHR11157:SF21 | ELONGATION OF VERY LONG CHAIN FATTY ACIDS PROTEIN | 3 | 151 | 1.0E-49 |
| 1 | g3682.t80 | Pfam | PF01151 | GNS1/SUR4 family | 29 | 153 | 5.6E-28 |
| 9 | g3682.t80 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 26 | - |
| 11 | g3682.t80 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 27 | 48 | - |
| 7 | g3682.t80 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 49 | 68 | - |
| 10 | g3682.t80 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 90 | - |
| 8 | g3682.t80 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 91 | 154 | - |
| 6 | g3682.t80 | ProSitePatterns | PS01188 | ELO family signature. | 142 | 150 | - |
| 5 | g3682.t80 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 26 | 48 | - |
| 4 | g3682.t80 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 69 | 91 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed