General information for g3693.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 7.
Parent gene
- The parent gene g3693 is located on chr_3: 27483618..27491936 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3693 | g3693.t11 | isoform | g3693.t11 | 27483574 | 27484613 |
| chr_3 | g3693 | g3693.t11 | exon | g3693.t11.exon1 | 27483574 | 27484156 |
| chr_3 | g3693 | g3693.t11 | TTS | g3693.t11 | 27483613 | 27483613 |
| chr_3 | g3693 | g3693.t11 | cds | g3693.t11.CDS1 | 27483684 | 27484156 |
| chr_3 | g3693 | g3693.t11 | exon | g3693.t11.exon2 | 27484264 | 27484378 |
| chr_3 | g3693 | g3693.t11 | cds | g3693.t11.CDS2 | 27484264 | 27484288 |
| chr_3 | g3693 | g3693.t11 | exon | g3693.t11.exon3 | 27484442 | 27484613 |
| chr_3 | g3693 | g3693.t11 | TSS | g3693.t11 | 27484712 | 27484712 |
Sequences
>g3693.t11 Gene=g3693 Length=870
ATGCCTGCCGAACTTTCAACCGCAAAAGTAGTAATTCATCCATTGGTTTTGCTATCAGTT
GTCGATCATTTCACTAGAATGAGTAAAATTGGTAATCAAAAGAGAGTTGTTGGTGTTTTG
CTTGGTTGTTGGAAAGCAAAAGGAATTTTAGATGTTTCAAACAGTTTTGCAGTTCCATTT
GATGAAGATGATAAAGATAAAAGTGTTTGGTTCTTGGATCATGATTATCTTGAATCAATG
TATGGTATGTTCAAGAAAGTAAATGCACGTGAAAGAGTTGTTGGCTGAACTTGGTTTGCC
TACTGAAGCATATATTGCAGTTGAAGAGGTTCATGATGATGGAACATTAACTAAAAAAAC
ATTTGAGCATGTCCCGAGTCAAATTGGTGCAGAAGAAGCTGAAGAAGTTGGTGTTGAACA
CCTATTACGTGATATCAAAGACACTACTGTTGGAAGTTTGTCACAGAAAGTCACGAATCA
ACTATTGGGTTTAAAAGGACTAAATGCGCAACTTCGAGATATTAAAGAGTATCTACTCAA
AGTTGGAAATGGAGAAATGCCCATCAATCATCAAATTATGTATCAAATGCAAGATATTTT
CAATCTTCTTCCCGACATTAGTCATGATAATTTCACCGACACTCTTTATATCAAGACTAA
CGATCAAATGCTTGTTGTTTATTTAGCTTCATTGGTTCGATCCATTATTGCTTTACATAA
TTTAATTAACAATAAGCTTACAGAAGTATGTCAAGAATAAAAGGACATGTTTGATGTATG
AATTCTCTTCTCTATTTGTATTTCTTGAATTCAATAAACACTTACAAACTGAACTTTATG
AATTTAATAAACATTTATATTTAAACTTTC
>g3693.t11 Gene=g3693 Length=165
MHVKELLAELGLPTEAYIAVEEVHDDGTLTKKTFEHVPSQIGAEEAEEVGVEHLLRDIKD
TTVGSLSQKVTNQLLGLKGLNAQLRDIKEYLLKVGNGEMPINHQIMYQMQDIFNLLPDIS
HDNFTDTLYIKTNDQMLVVYLASLVRSIIALHNLINNKLTEVCQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g3693.t11 | Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase | 1 | 64 | 0 |
| 2 | g3693.t11 | PANTHER | PTHR10540:SF12 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 7 | 9 | 161 | 0 |
| 3 | g3693.t11 | PANTHER | PTHR10540 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 9 | 161 | 0 |
| 1 | g3693.t11 | Pfam | PF13012 | Maintenance of mitochondrial structure and function | 45 | 156 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed