General information for g3701.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g3701 is located on chr_3: 27554875..27556092 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3701 | g3701.t12 | TSS | g3701.t12 | 27554096 | 27554096 |
| chr_3 | g3701 | g3701.t12 | isoform | g3701.t12 | 27554875 | 27555719 |
| chr_3 | g3701 | g3701.t12 | exon | g3701.t12.exon1 | 27554875 | 27555719 |
| chr_3 | g3701 | g3701.t12 | cds | g3701.t12.CDS1 | 27555296 | 27555379 |
| chr_3 | g3701 | g3701.t12 | TTS | g3701.t12 | 27555715 | 27555715 |
Sequences
>g3701.t12 Gene=g3701 Length=845
GGTGAACAATGGAACACTTACATATGATCATGATCGAGATGGAACACATACACAATTAGC
AGGATGTGAAGCTCGGTTTAGAAATGTTGAACATACGACACAATTGAAAATTAGATACGA
AAACGATGTGCTCTCTGTACATACAGATCTTGAGAACAAAAATGAATGGAAAGAATGTTT
TACCGTTGATGGTGTTGAACTTCCAACTGGTTATTATTTTGGTGCATCAGCTACAACAGG
CGATCTCAGTGATAATCATTTAATTAACTCCATAAAATTCTTCGAGCTTGAAGGTGCAAC
TACTGCTGAACGCTCTCAAATTATTCCGCATGCTGCAAAATTTGAAGAGCCTCGCGAGCA
CGTAGACGACCCAAAGCCGGGTTGGTCGAATCTTAAAATTTTTATAGTCATTCTTTTTGG
AATGATCGGCGCTGTAATTCTCAGCATTGGAGGATATATGTACTATGAAAAATATCAACA
GAATAAAAAGAAAAGATTTTACTGAGGAAAAGCCAAACGAACTCAGCAAGCATCAACGAC
TGCACATAAAAGTAAATTTGTTTAAATAAGAATCTTCCTTTTACTTTCGCATCTTACTCT
TTATACCGAATTCTTCCACAAGACTTGCTGAATTCGATTTAACTTGAATCATACTGAAAT
CAGAAATTGAAAACTTAATGTTCATTATAAATTTTGAAAACCAAAAAATGCAACTACGTA
GAAACATTAAATAATGTCCCTATATCTATTTTTCCCCTTACAAGGATCTCCCTCCTTTTT
ATCATCATTTTCGATGAATCATAATAAAATAAATGTTTTTATGTTTAAACGCCATCATCC
TAAAA
>g3701.t12 Gene=g3701 Length=27
MIGAVILSIGGYMYYEKYQQNKKKRFY
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
