General information for g3702.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Wolframin.
Parent gene
- The parent gene g3702 is located on chr_3: 27558179..27558888 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3702 | g3702.t17 | isoform | g3702.t17 | 27558179 | 27558888 |
| chr_3 | g3702 | g3702.t17 | exon | g3702.t17.exon1 | 27558179 | 27558588 |
| chr_3 | g3702 | g3702.t17 | cds | g3702.t17.CDS1 | 27558179 | 27558588 |
| chr_3 | g3702 | g3702.t17 | exon | g3702.t17.exon2 | 27558654 | 27558727 |
| chr_3 | g3702 | g3702.t17 | cds | g3702.t17.CDS2 | 27558654 | 27558727 |
| chr_3 | g3702 | g3702.t17 | exon | g3702.t17.exon3 | 27558794 | 27558888 |
| chr_3 | g3702 | g3702.t17 | cds | g3702.t17.CDS3 | 27558794 | 27558888 |
| chr_3 | g3702 | g3702.t17 | TSS | g3702.t17 | 27558967 | 27558967 |
| chr_3 | g3702 | g3702.t17 | TTS | g3702.t17 | NA | NA |
Sequences
>g3702.t17 Gene=g3702 Length=579
ATGGCTAATTGGTTAAATGGTGCAAACAATCAAGATAAATCAAAGCAACGCAAACGATGG
GAAATAGAAGACAAGAAATTGCTTAAAAACTTAAGAATGAAACTGGCAGATGATGGAAAC
AGTGATTGTCAATTTGAAGCTGCAAAAATGCTATTGGATGACACAGATGATCTCGATTCA
TCTTGTCAAGTTCAGGGAATTAATTACCTCAAAAAGGCAGCATCGCAAGGTCATGAAATG
GCGCTTGAATTATTAGGAGCATGCTATCGAACAAGACGAGGTATAAATTCAAGTAATGAA
AGTGAGATCAAAGAATTTTTGTCTCTTACACCAGCTGAGAGAACGGCTCGACATGCAGCT
CATGAACTTTTCAATAGTCTATGCAATGGAAATGAATATGTTACGGTTGAACAATTAGAA
AAACGAATGAGAGAAATTTATAAATTACAAAAGAAAAAGAAGAAACATGATGATGGAAGA
GTATATGATAATGAAGAAATTTTAGACCAAGAGGAAATAGAAGAAGCCAATATTAGCAGT
AGCAACAAAACGTCTTCATCGTCCTTTTATATTAGAAAA
>g3702.t17 Gene=g3702 Length=193
MANWLNGANNQDKSKQRKRWEIEDKKLLKNLRMKLADDGNSDCQFEAAKMLLDDTDDLDS
SCQVQGINYLKKAASQGHEMALELLGACYRTRRGINSSNESEIKEFLSLTPAERTARHAA
HELFNSLCNGNEYVTVEQLEKRMREIYKLQKKKKKHDDGRVYDNEEILDQEEIEEANISS
SNKTSSSSFYIRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g3702.t17 | Gene3D | G3DSA:1.25.40.10 | - | 4 | 188 | 0 |
| 1 | g3702.t17 | PANTHER | PTHR13098 | WOLFRAMIN | 11 | 168 | 0 |
| 2 | g3702.t17 | PANTHER | PTHR13098:SF3 | WOLFRAMIN | 11 | 168 | 0 |
| 4 | g3702.t17 | PRINTS | PR02060 | Wolframin family signature | 67 | 88 | 0 |
| 3 | g3702.t17 | PRINTS | PR02060 | Wolframin family signature | 93 | 106 | 0 |
| 5 | g3702.t17 | PRINTS | PR02060 | Wolframin family signature | 110 | 128 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
