General information for g3707.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine/threonine-protein phosphatase 5.
Parent gene
- The parent gene g3707 is located on chr_3: 27570043..27570764 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3707 | g3707.t7 | isoform | g3707.t7 | 27569879 | 27570500 |
| chr_3 | g3707 | g3707.t7 | exon | g3707.t7.exon1 | 27569879 | 27570500 |
| chr_3 | g3707 | g3707.t7 | cds | g3707.t7.CDS1 | 27570101 | 27570436 |
| chr_3 | g3707 | g3707.t7 | TTS | g3707.t7 | 27570813 | 27570813 |
| chr_3 | g3707 | g3707.t7 | TSS | g3707.t7 | NA | NA |
Sequences
>g3707.t7 Gene=g3707 Length=622
ACGGAAAATATTTCTTATTCATTTTTTTTAATTTTATTCTTTCGATTATATCTATTTTAA
GGGCAATTTTATGATCTATTAAACATTTTTGAAAAAAATGGTCTTCCTTCCGAAACAAAT
CCTTATTTATTCAATGGTGATTTTGTTGATCGTGGTTCGTTTAGTGTTGAATGTATTTTT
ACACTATTTGGTTTTAAACTGCTATATCCAAATCATTTTTATATGAGCCGAGGAAATCAT
GAATCAGTAAATATGAATCAAATGTATGGCTTTACTGGTGAAGTAACAGCAAAATATAAT
AGCACTATGGCTGATATGTTCACGCAAGTTTTTAATTTCTTGCCACTATCACATGTGCTC
AATAATAAAGTGCTTGTATGTCACGGTGGCCTCTTTTCAAGTGATGATGTTATGCTCGAT
GATTTACGTAAAATTGAAAGAAATAGGCAACCTCCAGAGGAAGGTTTAATGTGTGAATTA
CTATGGTCAGATCCACAAGCTCAAAATGGTAGAGCTCCTTCAAAACGAGGTGTTGGTTGT
CAGTTTGGTAAGTTTTAATTTAATTTCAATAATGTGTCTATTTTGACTTATACATTTTAT
CATCATAGGTCCTGATGTGACT
>g3707.t7 Gene=g3707 Length=111
MSRGNHESVNMNQMYGFTGEVTAKYNSTMADMFTQVFNFLPLSHVLNNKVLVCHGGLFSS
DDVMLDDLRKIERNRQPPEEGLMCELLWSDPQAQNGRAPSKRGVGCQFGKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g3707.t7 | Gene3D | G3DSA:3.60.21.10 | - | 1 | 111 | 0.00000 |
| 2 | g3707.t7 | PANTHER | PTHR45668 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | 1 | 110 | 0.00000 |
| 3 | g3707.t7 | PANTHER | PTHR45668:SF5 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5 | 1 | 110 | 0.00000 |
| 6 | g3707.t7 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 1 | 25 | 0.00000 |
| 5 | g3707.t7 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 35 | 61 | 0.00000 |
| 4 | g3707.t7 | PRINTS | PR00114 | Serine/threonine phosphatase family signature | 65 | 92 | 0.00000 |
| 1 | g3707.t7 | Pfam | PF00149 | Calcineurin-like phosphoesterase | 1 | 93 | 0.00000 |
| 8 | g3707.t7 | SMART | SM00156 | pp2a_7 | 1 | 111 | 0.00034 |
| 7 | g3707.t7 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 3 | 110 | 0.00000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016787 | hydrolase activity | MF |
| GO:0004721 | phosphoprotein phosphatase activity | MF |
| GO:0006470 | protein dephosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
