Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative TELO2-interacting protein 1-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3710 g3710.t1 TTS g3710.t1 27574807 27574807
chr_3 g3710 g3710.t1 isoform g3710.t1 27574841 27578006
chr_3 g3710 g3710.t1 exon g3710.t1.exon1 27574841 27577379
chr_3 g3710 g3710.t1 cds g3710.t1.CDS1 27574841 27577379
chr_3 g3710 g3710.t1 exon g3710.t1.exon2 27577436 27577699
chr_3 g3710 g3710.t1 cds g3710.t1.CDS2 27577436 27577699
chr_3 g3710 g3710.t1 exon g3710.t1.exon3 27577759 27578006
chr_3 g3710 g3710.t1 cds g3710.t1.CDS3 27577759 27578006
chr_3 g3710 g3710.t1 TSS g3710.t1 27578075 27578075

Sequences

>g3710.t1 Gene=g3710 Length=3051
ATGAATATACAAGCTGAAGCTCTTAAATTAAAAGTGTTTGTTGAACATCTTGATCGAACT
AGAACATTAGAAAATGCAGTCAAATTGTTACATGAGCTCAAATCGTTAGGAAATGTGAAT
TTACAATTTATTCAAGATTTTGTGCTTACTAAACTTTTAGTTATTATCGATTCTGCTGAT
AATTTTGGAAAGAAATTAAATGAGTTTAAAACAGTTTTGATACAGTGTATAAATATCATT
ATTTCAAAATCTAAAATAATTAACGAACTGCCTTATAGAACGATACTGTGCATAATTACT
CAACAAATATATGACAGGACGAAAAATGCTTACCTAATTGAGCTCTCTGAAGAACTTAAG
ATGGCAATTTTTGATTGCTTAGAAATAGCTTCTCGAAATTTAGATTTTGATGTCATTGAT
TCATTCATGGTCAAAGAAAATCAAATCATAATAGGACAATGCTTATTTGTCTGTAAAGAA
GCTATTATGAATGAAACGTATATGAAAATTCGCATAAAAGCAGTTAAAGCAACAATAGCA
CTAACTCAATGTCACGATAATGCAGACATTAGCGATATTGTATTGAGAGAAAAGATATCA
AAAATTATTTTTGTTGTTTTACCTAAAATTTCAACTACTTTAATAAAAGTATGTGGTGAG
GATACATTGAGAGGACCTCATTTAATTCAAGTTGCTGTTAAATGCTTAGGACGGTTTTTG
ACTCTCATATTTTATGATTATGCAAAGAGAAATCAACAGCAAATTACAAAAAAAGATTTT
TTGAAATTACTTGAGACCTCCAAATCTGAAAAGAACTTAAAAGAATCAAAAACTAAAGTA
ATTAATATGGTAAAATCAGATGAGTGGCTGCAATCAGCTTCAAAAAATCTTTTAAAAATA
ATGGTGAATATGAAAGCGCTCAGACATAATGAATATAAATCGATTCGACACGAGCTTGCA
GTGATGAGTTTCAACATGATTTTCAATTGTTCTTCAAATATTGAACCACTTATTCGATTA
TTGCTTGAAAATCTCATCGTTCTTTCATCTGATAGTGATCAAGAAATTCAATCATATAGT
CAAGACAAATTATCGAAAATTGCTGAAATTATTCCAAATATAGATCATGAAATATCAGAA
CTTTTCATACTTCACTTAAATGTTATGCCAAGAGTACTAATGACTGGAATGGATGGAGAG
AAATCTGCAGGAATATCTTTATTGAATAGCTATATAAAAATTTTCTCATCTGACAGTGCA
AAATTTGATTCAGTGCTCAGTAATTTTTCTACATTGGAAAAGTTTTTAAACATTCTCACC
TGCTGCTGTGAATTAGAAACATCAACTGAATTCATCTCATTTGAAACAACAGTTACAAAT
AATTTAGATGATCAATTTTACAATTTGAAAATGCCATGGAAAAAATTTAGACACCTCTGT
AATGATGCATCAATTAATAATTTCTCTGATTTATGCAAAAATTTATCACATTCAAAATCG
ATTGCTTCATTATGTGTAAATTTTATTCTCGATCGTATGAATTCAATTGAACATGTAGTT
TGTCTGATTGAAATTTTAGCATGTGATGAAAACTCTTCAATTGAAAAATCTGAAATTGAA
AACATTTTTGAAGATTTTCTTGCTGATATTTATTGGAATTTGCCAACAAAACACTCTCAA
ATTAAGGATCACAAAAAATCAAGATTAAATGAACAATGGTTTAAAGACAATACACCTGGA
CTCTATGAGTCTGCAATTGAAATTAGATTGTTTGATAAGCCATACAATAAAGAAGACGAT
ATTGAAGATCAACAATTAATGTCATTAAAAATTTTAAATTACAACACTCTATGTACATGC
ATCATTATAGAATTGACCGGAAAAGTTGCATTGAAATTAAAAAAGGATTTTCATAAATAT
CTTCTCCGTTGTTTGCATCAAGTGCTTAAAAAAGCAGGCAGTTCAAATTTTCTTATAAAA
TCAGCTGGTTTATATGCGCTCAATTGTATAAAAGAAGCATTGGGATATACTGACCTTTCT
CAACTCATTGATGATAATGCAAACTTCTTACTTTTCAACATTCAAAAGATGCTCAAACAC
AGAAAAGATAATGAATCAATTTTGGACATGCTTTCAATCATTTTCAAATACTCAAAAACA
TCAATAAATGAATATATTGATGATATTGTAGAGATGGTAACAAATCAAATTACAAGTGTA
AAAAACTCAGAATACCATTTAAAACTATTTGAACTTTACATGCGTTCTGTTAAAAGTGAG
ATTGTAATTGAAGATCTAAATTTAAATGAAAAGATTATTTGGGATGATTTTTTGCAGAAT
TGTTTTAATGAGCTTGATAGTAAAATTGAAGAAGAAAATATAGATATAAATCAAAATGAA
ACTGATAGCAAGTCAATAGGTCAAGAAGAAATTAATGAAGATCAAGAAACGCTGAAAGAG
GAAGAAAAATTACCACTTCATATAGAAATTATTTTAAGAATTCTCAATACATCGTTACCA
TTCTTTGCATCAAAAGATCAAAATGAAATAATTTCTACACACGAAATATTTCGAATGGCT
ATACCTATTTTACAAATTTATGAGAAAGAATTTCTTCCAATGATTCATAAAATGTGGTAT
CCTTTTACTAAGCAGTTTCAAGGAAATAATTTTGTGATATTACAACATTCATTTGAATTG
TTAACAGTAATTGCTCATTATGCAAAAGATTTTATTTATAAAAAGTCTATAGACAAAATC
ATACCTATAATTAATGAATTTTTAAAATCATCTTATAATCACACGAATTCAAAAGAAAAT
TTTTTTTATACCCAAGAATTTAAATTGCAAAAAGAAATTTTAAGTAAATATGGAAAGTTA
TCAATTAGTTTAGGAGTTGATGATAAAGAGCAAGATGATATAATCTCACTTTTAATTTTA
TATATGAGACATCATTTTAATGATGAATTAAGAAATGCCTCAAAATGTTCACTTGATTTT
ATTTCACACAATGATCCAATGTTAATTGATTTTAAACTTTTCTTTGAATAA

>g3710.t1 Gene=g3710 Length=1016
MNIQAEALKLKVFVEHLDRTRTLENAVKLLHELKSLGNVNLQFIQDFVLTKLLVIIDSAD
NFGKKLNEFKTVLIQCINIIISKSKIINELPYRTILCIITQQIYDRTKNAYLIELSEELK
MAIFDCLEIASRNLDFDVIDSFMVKENQIIIGQCLFVCKEAIMNETYMKIRIKAVKATIA
LTQCHDNADISDIVLREKISKIIFVVLPKISTTLIKVCGEDTLRGPHLIQVAVKCLGRFL
TLIFYDYAKRNQQQITKKDFLKLLETSKSEKNLKESKTKVINMVKSDEWLQSASKNLLKI
MVNMKALRHNEYKSIRHELAVMSFNMIFNCSSNIEPLIRLLLENLIVLSSDSDQEIQSYS
QDKLSKIAEIIPNIDHEISELFILHLNVMPRVLMTGMDGEKSAGISLLNSYIKIFSSDSA
KFDSVLSNFSTLEKFLNILTCCCELETSTEFISFETTVTNNLDDQFYNLKMPWKKFRHLC
NDASINNFSDLCKNLSHSKSIASLCVNFILDRMNSIEHVVCLIEILACDENSSIEKSEIE
NIFEDFLADIYWNLPTKHSQIKDHKKSRLNEQWFKDNTPGLYESAIEIRLFDKPYNKEDD
IEDQQLMSLKILNYNTLCTCIIIELTGKVALKLKKDFHKYLLRCLHQVLKKAGSSNFLIK
SAGLYALNCIKEALGYTDLSQLIDDNANFLLFNIQKMLKHRKDNESILDMLSIIFKYSKT
SINEYIDDIVEMVTNQITSVKNSEYHLKLFELYMRSVKSEIVIEDLNLNEKIIWDDFLQN
CFNELDSKIEEENIDINQNETDSKSIGQEEINEDQETLKEEEKLPLHIEIILRILNTSLP
FFASKDQNEIISTHEIFRMAIPILQIYEKEFLPMIHKMWYPFTKQFQGNNFVILQHSFEL
LTVIAHYAKDFIYKKSIDKIIPIINEFLKSSYNHTNSKENFFYTQEFKLQKEILSKYGKL
SISLGVDDKEQDDIISLLILYMRHHFNDELRNASKCSLDFISHNDPMLIDFKLFFE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g3710.t1 PANTHER PTHR18460 TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER 20 1006 0
g3710.t1 SUPERFAMILY SSF48371 ARM repeat 622 1010 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values