General information for g3719.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine/threonine-protein phosphatase 4 regulatory subunit 3.
Parent gene
- The parent gene g3719 is located on chr_3: 27639448..27640122 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3719 | g3719.t2 | isoform | g3719.t2 | 27638616 | 27639938 |
| chr_3 | g3719 | g3719.t2 | exon | g3719.t2.exon1 | 27638616 | 27639938 |
| chr_3 | g3719 | g3719.t2 | cds | g3719.t2.CDS1 | 27638617 | 27639507 |
| chr_3 | g3719 | g3719.t2 | TSS | g3719.t2 | 27640929 | 27640929 |
| chr_3 | g3719 | g3719.t2 | TTS | g3719.t2 | NA | NA |
Sequences
>g3719.t2 Gene=g3719 Length=1323
GCATTTCACTGCTGGTGCGTGCAGAAAATGATGGATCACTGTTGCTTGAAAGCAAAATTC
AGCCAGACACTGCCTATCAAAAACAGCAAGATACACTGATTGTATGGAGTGAGGGCGATA
ATTTTGATTTAGCACTCAGTTTCCAAGAAAAGGCTGGCTGTGACGAGATTTGGGAGAAAA
TATGTCAAGTTCAAGGAAAAGATCCTTCAGTTGATACAACACAAGATCTCGTTGAAGAGT
CAGAAGACGAACGATATGAAGATCTTCCTGATTCTGTTCCTCCAATTGAATTACCGCCAT
GTGAAATTTCCCGCTTAGAAGAAATCAGTGAGCTGATATCTCAATGTCTCAACACACAAA
TACGTAAAGAAAAATTGGCAGTTGCATTAGAACAAGAGAATTATATTAAGAAATTGCTTA
ATTTATTTCACATGTGCGAAGATTTGGAGAATCAAGAAGGACTCCATTGTCTCTTTGAAA
TTTTCAAAAATATTTTTTTACTAAATCGCACGCAACTCTTTGAAATTATGTTTGCCGAAG
ACACTATTTTTGATGTTGTTGGATGTTTGGAATATGATCCAGTTGCTGGCACTCCCAAGA
GACATCGAAATTATCTTAAGCAATTCTCAAAGTTCCGTGAGCCAATAGAAATTAAAAATC
CGGATTTGTTGGCGAAAATTCACCAGACATATCGTGTTCAGTACATACAAGATATTGTTT
TACCAGCACCGTCTGTATTTGAGGATGCAATGCTGAATTCTCTGTCTAGTTTCATATTTT
TTAATAAATGCGAGATTGTGACACTAATTCAAGAGGACGAAAAGTACTTGGACGATCTCT
TCTCTTTATTAAGCGATCTAAATACACCACTCGATAAGCGTCGAGACTCTGTTTTATTCT
TGAAAGAATTTTGTAGCTATGCACAACTCTTGCAACCGCATGCAAAAGAAGCATTTTATA
AAAGCTTGATCACACTTGGAATTTTACCCGCATTGGAAATCATACTTAATATTAATGATC
CTAAAATCAAGTCAGCTTCAATTGATATTCTTACAACTATCGTCGAATATTCACCATCGT
TAATACGAGATTACACTTTATCGCAATATACCAATCCTGAACATGATGAAGATCAGTGTT
TACTGAATATTACAATAGAACAAATGCTTAGTGATTCAGAACCTGAACTTGGTGGTGCTG
TGCAGCTAATGGGTGTTATAAGAATTCTCTTAGATCCTGAAACCATGCTCGCGAGTGCTA
ACAAAGCCGAGAAGACAGATTTTCTCAATTTCTTTTATAGAAATTCCATTCACATACTTA
TTG
>g3719.t2 Gene=g3719 Length=297
MCEDLENQEGLHCLFEIFKNIFLLNRTQLFEIMFAEDTIFDVVGCLEYDPVAGTPKRHRN
YLKQFSKFREPIEIKNPDLLAKIHQTYRVQYIQDIVLPAPSVFEDAMLNSLSSFIFFNKC
EIVTLIQEDEKYLDDLFSLLSDLNTPLDKRRDSVLFLKEFCSYAQLLQPHAKEAFYKSLI
TLGILPALEIILNINDPKIKSASIDILTTIVEYSPSLIRDYTLSQYTNPEHDEDQCLLNI
TIEQMLSDSEPELGGAVQLMGVIRILLDPETMLASANKAEKTDFLNFFYRNSIHILI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3719.t2 | PANTHER | PTHR23318:SF3 | SERINE/THREONINE-PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 3A | 1 | 296 | 0.0e+00 |
| 3 | g3719.t2 | PANTHER | PTHR23318 | ATP SYNTHASE GAMMA-RELATED | 1 | 296 | 0.0e+00 |
| 1 | g3719.t2 | Pfam | PF04802 | Component of IIS longevity pathway SMK-1 | 1 | 179 | 0.0e+00 |
| 4 | g3719.t2 | SUPERFAMILY | SSF48371 | ARM repeat | 126 | 268 | 3.9e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
