General information for g3719.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine/threonine-protein phosphatase 4 regulatory subunit 3.
Parent gene
- The parent gene g3719 is located on chr_3: 27639448..27640122 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3719 | g3719.t3 | isoform | g3719.t3 | 27639448 | 27640122 |
| chr_3 | g3719 | g3719.t3 | exon | g3719.t3.exon1 | 27639448 | 27639938 |
| chr_3 | g3719 | g3719.t3 | cds | g3719.t3.CDS1 | 27639448 | 27639938 |
| chr_3 | g3719 | g3719.t3 | exon | g3719.t3.exon2 | 27640002 | 27640122 |
| chr_3 | g3719 | g3719.t3 | cds | g3719.t3.CDS2 | 27640002 | 27640122 |
| chr_3 | g3719 | g3719.t3 | TSS | g3719.t3 | 27640929 | 27640929 |
| chr_3 | g3719 | g3719.t3 | TTS | g3719.t3 | NA | NA |
Sequences
>g3719.t3 Gene=g3719 Length=612
ATGACAACACAAGACACAAGTACACGGAGACGAGTGAAGCTTTATGCGCTAAATGCTGAT
CGACAATGGGACGATCGTGGAACAGGTCATGTAACTTCAAGTTATGTAGATCGATTGAAA
GGCATTTCACTGCTGGTGCGTGCAGAAAATGATGGATCACTGTTGCTTGAAAGCAAAATT
CAGCCAGACACTGCCTATCAAAAACAGCAAGATACACTGATTGTATGGAGTGAGGGCGAT
AATTTTGATTTAGCACTCAGTTTCCAAGAAAAGGCTGGCTGTGACGAGATTTGGGAGAAA
ATATGTCAAGTTCAAGGAAAAGATCCTTCAGTTGATACAACACAAGATCTCGTTGAAGAG
TCAGAAGACGAACGATATGAAGATCTTCCTGATTCTGTTCCTCCAATTGAATTACCGCCA
TGTGAAATTTCCCGCTTAGAAGAAATCAGTGAGCTGATATCTCAATGTCTCAACACACAA
ATACGTAAAGAAAAATTGGCAGTTGCATTAGAACAAGAGAATTATATTAAGAAATTGCTT
AATTTATTTCACATGTGCGAAGATTTGGAGAATCAAGAAGGACTCCATTGTCTCTTTGAA
ATTTTCAAAAAT
>g3719.t3 Gene=g3719 Length=204
MTTQDTSTRRRVKLYALNADRQWDDRGTGHVTSSYVDRLKGISLLVRAENDGSLLLESKI
QPDTAYQKQQDTLIVWSEGDNFDLALSFQEKAGCDEIWEKICQVQGKDPSVDTTQDLVEE
SEDERYEDLPDSVPPIELPPCEISRLEEISELISQCLNTQIRKEKLAVALEQENYIKKLL
NLFHMCEDLENQEGLHCLFEIFKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g3719.t3 | Gene3D | G3DSA:2.30.29.30 | - | 5 | 126 | 0e+00 |
| 2 | g3719.t3 | PANTHER | PTHR23318 | ATP SYNTHASE GAMMA-RELATED | 7 | 203 | 0e+00 |
| 3 | g3719.t3 | PANTHER | PTHR23318:SF18 | SERINE/THREONINE-PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 3B | 7 | 203 | 0e+00 |
| 1 | g3719.t3 | Pfam | PF04802 | Component of IIS longevity pathway SMK-1 | 172 | 204 | 2e-07 |
| 4 | g3719.t3 | SUPERFAMILY | SSF50729 | PH domain-like | 9 | 105 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
