General information for g373.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Torso-like protein.
Parent gene
- The parent gene g373 is located on chr_3: 3056019..3060467 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g373 | g373.t4 | isoform | g373.t4 | 3056019 | 3060467 |
| chr_3 | g373 | g373.t4 | exon | g373.t4.exon1 | 3056019 | 3056327 |
| chr_3 | g373 | g373.t4 | cds | g373.t4.CDS1 | 3056019 | 3056327 |
| chr_3 | g373 | g373.t4 | exon | g373.t4.exon2 | 3056398 | 3056487 |
| chr_3 | g373 | g373.t4 | cds | g373.t4.CDS2 | 3056398 | 3056487 |
| chr_3 | g373 | g373.t4 | exon | g373.t4.exon3 | 3056560 | 3056988 |
| chr_3 | g373 | g373.t4 | cds | g373.t4.CDS3 | 3056560 | 3056988 |
| chr_3 | g373 | g373.t4 | exon | g373.t4.exon4 | 3057232 | 3057566 |
| chr_3 | g373 | g373.t4 | cds | g373.t4.CDS4 | 3057232 | 3057447 |
| chr_3 | g373 | g373.t4 | exon | g373.t4.exon5 | 3060416 | 3060467 |
| chr_3 | g373 | g373.t4 | TSS | g373.t4 | 3060473 | 3060473 |
| chr_3 | g373 | g373.t4 | TTS | g373.t4 | NA | NA |
Sequences
>g373.t4 Gene=g373 Length=1215
GAACTAAGTGTCGAGTTAACAAGTTGGATATAAGTCTTTCACGTTTTATACGAGAGAAAC
TTGAATTTTTCCCAACGAGAGAGTGGAATTGTGGATTCAGACGGACAAGCAGCCAACGAA
AAATATCATTGACTGGCATATTCTATACATGAGTATTGGTTTGCTAATATTATGACACGA
TCAAAATGGATAAGTCTTCTTGCTCTAGCACTTATTTCATCAGCATATACGGCAAAGGGT
CAAAGTGAATCGTTACTAAGAGTTGGAAAGGCAATTAATGTATTTGTGCGATACGGGTAT
CTCTCAATTTCGATGAAAGTTATTTCATACAACGATACAGAGAAATGGATTTTCAAGGTG
AGCATCAAATCTTTTATATATTTTTTTGGATTAAACATCCAAGAAACACCGGAAGACAAT
TCGAAAAATTTCAATGGCGACTTTCATATGGAATTTTGTGACAACAAACAACAACTGTTT
CAAGCCTATTTTCGTGAATTTAAGATTGAACAAATGTCTAGTCCATACAAAGCCTTCCAG
AGTGGCTGGCATGCTGAAATATCGGCAAAAAAATTGGGAATTAATTCATCGTATATTATC
GGTGATACATACAGCTATGTGCTAGTGCGTGTATCAAGGTTCCGCGAGAGCGCAAAATTG
AGAAAGCCAATTGCACCAAATCAGCCAATAGAGGCGAGTGCACTTGAAAAAATAAAGAAT
GTTACAGTTGGAAACACTGTTTCAGTGCTACAATTTATTGAGAAATTTGGTAGTCATTAC
ATCAATAGTTATGTAACAGGCAATAGTTTGTATCAGGTGTTTGTTTTTAATAAACAAAAC
TACAAGCACATTAAAGAAAGATTAAAATCTCGAGGCGTTCTATCGCTGTCAAAAAGCGAT
CTTTATAACTTTTTTGCTCCCTGGTTTGCTGAACATCTCGGAAGCATAAGATGTGCTTCT
GGTAATTCATCAGTCGAACGATGGGCATCGAGAAAGCTAAAATTAAGCTACTACCTCTTT
ACCTATAACAGTCTTTTAAAACTTCATGGATCTAATTCGCTGCTTAAAGCACTTGATGAG
TTATTAGGGAACGAGGCAATTTTGCAATTAGAGCTAAAATCATTAGACGTTGCTTTTAAA
GATACAGATAAGCGTCGATGGTATCAAATTATTTTAGACAATACAATAAAGCTTTGGGAA
GTAAATATGAGCTAA
>g373.t4 Gene=g373 Length=347
MTRSKWISLLALALISSAYTAKGQSESLLRVGKAINVFVRYGYLSISMKVISYNDTEKWI
FKVSIKSFIYFFGLNIQETPEDNSKNFNGDFHMEFCDNKQQLFQAYFREFKIEQMSSPYK
AFQSGWHAEISAKKLGINSSYIIGDTYSYVLVRVSRFRESAKLRKPIAPNQPIEASALEK
IKNVTVGNTVSVLQFIEKFGSHYINSYVTGNSLYQVFVFNKQNYKHIKERLKSRGVLSLS
KSDLYNFFAPWFAEHLGSIRCASGNSSVERWASRKLKLSYYLFTYNSLLKLHGSNSLLKA
LDELLGNEAILQLELKSLDVAFKDTDKRRWYQIILDNTIKLWEVNMS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g373.t4 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 6 | g373.t4 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 7 | g373.t4 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 15 | - |
| 8 | g373.t4 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 4 | g373.t4 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 347 | - |
| 2 | g373.t4 | SMART | SM00457 | MACPF_8 | 147 | 340 | 1.2E-7 |
| 3 | g373.t4 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
| 1 | g373.t4 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K12377 (torso-like protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
