Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Prostatic acid phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3779 g3779.t14 TTS g3779.t14 27945194 27945194
chr_3 g3779 g3779.t14 isoform g3779.t14 27945711 27946481
chr_3 g3779 g3779.t14 exon g3779.t14.exon1 27945711 27945858
chr_3 g3779 g3779.t14 cds g3779.t14.CDS1 27945712 27945858
chr_3 g3779 g3779.t14 exon g3779.t14.exon2 27946157 27946255
chr_3 g3779 g3779.t14 cds g3779.t14.CDS2 27946157 27946255
chr_3 g3779 g3779.t14 exon g3779.t14.exon3 27946374 27946481
chr_3 g3779 g3779.t14 cds g3779.t14.CDS3 27946374 27946481
chr_3 g3779 g3779.t14 TSS g3779.t14 27946671 27946671

Sequences

>g3779.t14 Gene=g3779 Length=355
ATGCTTCGCATAAAAATATTTACACTGTTTGTTATAATACTTTTAAATTTAAATGTGTTG
ATTCATTGTGCCATAGAAAATAATGGGAAACTGATTGCTGCGTCGATTATATTTCGACAT
GGTGATAGGACTCCTGTGGAACCTTATCCCAATGACCCATATAAAGACCAATCACTTTGG
CCAGCACATTTCGGTCAATTAACGAATACTGGCAAAAGGCAGCATTTTGAACTTGGAAAA
TGGTTTCGTGCACGTTACAATAGTTTAGTAAGCGATAAATATAATCCTGATGAAATGCTT
GTACGTTCAACAGATATGGATCGTACGCTCATGTCGGCTATGAGTAATTTAGCAG

>g3779.t14 Gene=g3779 Length=118
MLRIKIFTLFVIILLNLNVLIHCAIENNGKLIAASIIFRHGDRTPVEPYPNDPYKDQSLW
PAHFGQLTNTGKRQHFELGKWFRARYNSLVSDKYNPDEMLVRSTDMDRTLMSAMSNLA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g3779.t14 CDD cd07061 HP_HAP_like 36 118 4.34393E-23
6 g3779.t14 Gene3D G3DSA:3.40.50.1240 - 30 118 1.4E-34
2 g3779.t14 PANTHER PTHR11567:SF192 ACID PHOSPHATASE 1, ISOFORM B 28 118 3.5E-30
3 g3779.t14 PANTHER PTHR11567 ACID PHOSPHATASE-RELATED 28 118 3.5E-30
1 g3779.t14 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 56 116 1.8E-12
8 g3779.t14 Phobius SIGNAL_PEPTIDE Signal peptide region 1 23 -
9 g3779.t14 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 5 -
10 g3779.t14 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 6 15 -
11 g3779.t14 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 23 -
7 g3779.t14 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 24 118 -
13 g3779.t14 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 31 45 -
4 g3779.t14 SUPERFAMILY SSF53254 Phosphoglycerate mutase-like 29 118 5.76E-33
5 g3779.t14 SignalP_EUK SignalP-noTM SignalP-noTM 1 23 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed