General information for g3786.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Adenosine kinase.
Parent gene
- The parent gene g3786 is located on chr_3: 27959095..27960562 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3786 | g3786.t1 | TTS | g3786.t1 | 27958960 | 27958960 |
| chr_3 | g3786 | g3786.t1 | isoform | g3786.t1 | 27959095 | 27960562 |
| chr_3 | g3786 | g3786.t1 | exon | g3786.t1.exon1 | 27959095 | 27959908 |
| chr_3 | g3786 | g3786.t1 | cds | g3786.t1.CDS1 | 27959095 | 27959908 |
| chr_3 | g3786 | g3786.t1 | exon | g3786.t1.exon2 | 27960000 | 27960068 |
| chr_3 | g3786 | g3786.t1 | cds | g3786.t1.CDS2 | 27960000 | 27960068 |
| chr_3 | g3786 | g3786.t1 | exon | g3786.t1.exon3 | 27960164 | 27960292 |
| chr_3 | g3786 | g3786.t1 | cds | g3786.t1.CDS3 | 27960164 | 27960292 |
| chr_3 | g3786 | g3786.t1 | exon | g3786.t1.exon4 | 27960549 | 27960562 |
| chr_3 | g3786 | g3786.t1 | cds | g3786.t1.CDS4 | 27960549 | 27960562 |
| chr_3 | g3786 | g3786.t1 | TSS | g3786.t1 | 27960679 | 27960679 |
Sequences
>g3786.t1 Gene=g3786 Length=1026
ATGTCTGAATTGAGAGACGGTTTGTTGCTGGGATTAGGAAATCCCTTATTAGATATATCT
GCTATTGTAGACAATGAATATTTGGCAAAGCATGATCTTGGGCCCGATAATGCAATTCTA
GCCGAAGACAAACACATGCCAATCTTCACAGAATTACAAGAAAAATATAACGCCGAATAT
ATTGCTGGTGGTTCGGTTCAAAATACACTTAGAGTGTGTCAATGGATTTTAGACAAACCA
AATGTTGCAGCGTATTTTGGATGCGTTGGACAAGATAAGAATGCTGAAATTTTAGAGAAA
AGAGCTAGAGCAGATGGTGTTGATGTTTGCTATCAAAAAAATGAAGAGCAGCTGACTGGC
AGATGTGCGGTACTTATCACAGGAAAGCATAGAAGTCTTATTGCTCATTTAGCAGCTGCA
AATTTCTTTTCTGAAGATCATATCGACAAAAATTTTAAATATGTAGAAAATGCGGAATAT
TTCTACATTAGTGGCTTTTTTCTCACAGTCAGTCCGCCTTCGATTCTGAAAGTTGCCAAG
CATGCAAAAGAAAATAATAAATCTCTCCTGATGAATCTATCAGCTCCTTTCATTTCACAA
TTGTTTAAAGAGCCTTTAATGCAAGTAATTCCTTATATAGATTTATTGTTTGGCAATGAA
TCAGAGGCACTGACATTTGCCAAAGAGCAGAATTTTGGAACGGAGAATCTCAAAGAAATT
GGCTTTAAAATGGTTTCTCTTCCAAAAGAGAATGAAAATCGTCCAAGAATTGTTATTTTA
ACACAAGGCTCACATCCTGTACTTCTGTTCGAGAACAATACTGTTCGCGAATTTCCTGTG
CAAGAAATTAAAGAATGCGATATTGTGGACACAAATGGTGCAGGTGATGGATTTGTTGGT
GGCTTTTTAAGTCAATTTATTCAAAAGAAATCTTTTGACGACTGCATAGCAGTTGGAATT
AGAGCAGCACGAGAAATTATTTTTAGAAGTGGCTGCTCAACTGAAGGAGAATTTAAATTT
TGCTAA
>g3786.t1 Gene=g3786 Length=341
MSELRDGLLLGLGNPLLDISAIVDNEYLAKHDLGPDNAILAEDKHMPIFTELQEKYNAEY
IAGGSVQNTLRVCQWILDKPNVAAYFGCVGQDKNAEILEKRARADGVDVCYQKNEEQLTG
RCAVLITGKHRSLIAHLAAANFFSEDHIDKNFKYVENAEYFYISGFFLTVSPPSILKVAK
HAKENNKSLLMNLSAPFISQLFKEPLMQVIPYIDLLFGNESEALTFAKEQNFGTENLKEI
GFKMVSLPKENENRPRIVILTQGSHPVLLFENNTVREFPVQEIKECDIVDTNGAGDGFVG
GFLSQFIQKKSFDDCIAVGIRAAREIIFRSGCSTEGEFKFC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g3786.t1 | CDD | cd01168 | adenosine_kinase | 18 | 335 | 3.95965E-122 |
| 11 | g3786.t1 | Gene3D | G3DSA:3.40.1190.20 | - | 10 | 331 | 2.5E-121 |
| 10 | g3786.t1 | Gene3D | G3DSA:3.30.1110.10 | - | 17 | 136 | 2.5E-121 |
| 2 | g3786.t1 | PANTHER | PTHR45769 | - | 4 | 335 | 2.1E-132 |
| 7 | g3786.t1 | PRINTS | PR00989 | Adenosine kinase signature | 68 | 77 | 1.1E-29 |
| 5 | g3786.t1 | PRINTS | PR00989 | Adenosine kinase signature | 85 | 99 | 1.1E-29 |
| 4 | g3786.t1 | PRINTS | PR00989 | Adenosine kinase signature | 116 | 131 | 1.1E-29 |
| 3 | g3786.t1 | PRINTS | PR00989 | Adenosine kinase signature | 152 | 178 | 1.1E-29 |
| 6 | g3786.t1 | PRINTS | PR00989 | Adenosine kinase signature | 261 | 280 | 1.1E-29 |
| 1 | g3786.t1 | Pfam | PF00294 | pfkB family carbohydrate kinase | 39 | 334 | 4.0E-61 |
| 9 | g3786.t1 | ProSitePatterns | PS00584 | pfkB family of carbohydrate kinases signature 2. | 290 | 303 | - |
| 8 | g3786.t1 | SUPERFAMILY | SSF53613 | Ribokinase-like | 10 | 333 | 3.74E-69 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor | MF |
| GO:0006166 | purine ribonucleoside salvage | BP |
| GO:0004001 | adenosine kinase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00856 (adenosine kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
