Gene loci information

Transcript annotation

  • This transcript has been annotated as Adenosine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3786 g3786.t20 TTS g3786.t20 27958960 27958960
chr_3 g3786 g3786.t20 isoform g3786.t20 27959095 27960294
chr_3 g3786 g3786.t20 exon g3786.t20.exon1 27959095 27959908
chr_3 g3786 g3786.t20 cds g3786.t20.CDS1 27959095 27959908
chr_3 g3786 g3786.t20 exon g3786.t20.exon2 27960000 27960068
chr_3 g3786 g3786.t20 cds g3786.t20.CDS2 27960000 27960068
chr_3 g3786 g3786.t20 exon g3786.t20.exon3 27960164 27960294
chr_3 g3786 g3786.t20 cds g3786.t20.CDS3 27960164 27960171
chr_3 g3786 g3786.t20 TSS g3786.t20 27960679 27960679

Sequences

>g3786.t20 Gene=g3786 Length=1014
AGAGACGGTTTGTTGCTGGGATTAGGAAATCCCTTATTAGATATATCTGCTATTGTAGAC
AATGAATATTTGGCAAAGCATGATCTTGGGCCCGATAATGCAATTCTAGCCGAAGACAAA
CACATGCCAATCTTCACAGAATTACAAGAAAAATATAACGCCGAATATATTGCTGGTGGT
TCGGTTCAAAATACACTTAGAGTGTGTCAATGGATTTTAGACAAACCAAATGTTGCAGCG
TATTTTGGATGCGTTGGACAAGATAAGAATGCTGAAATTTTAGAGAAAAGAGCTAGAGCA
GATGGTGTTGATGTTTGCTATCAAAAAAATGAAGAGCAGCTGACTGGCAGATGTGCGGTA
CTTATCACAGGAAAGCATAGAAGTCTTATTGCTCATTTAGCAGCTGCAAATTTCTTTTCT
GAAGATCATATCGACAAAAATTTTAAATATGTAGAAAATGCGGAATATTTCTACATTAGT
GGCTTTTTTCTCACAGTCAGTCCGCCTTCGATTCTGAAAGTTGCCAAGCATGCAAAAGAA
AATAATAAATCTCTCCTGATGAATCTATCAGCTCCTTTCATTTCACAATTGTTTAAAGAG
CCTTTAATGCAAGTAATTCCTTATATAGATTTATTGTTTGGCAATGAATCAGAGGCACTG
ACATTTGCCAAAGAGCAGAATTTTGGAACGGAGAATCTCAAAGAAATTGGCTTTAAAATG
GTTTCTCTTCCAAAAGAGAATGAAAATCGTCCAAGAATTGTTATTTTAACACAAGGCTCA
CATCCTGTACTTCTGTTCGAGAACAATACTGTTCGCGAATTTCCTGTGCAAGAAATTAAA
GAATGCGATATTGTGGACACAAATGGTGCAGGTGATGGATTTGTTGGTGGCTTTTTAAGT
CAATTTATTCAAAAGAAATCTTTTGACGACTGCATAGCAGTTGGAATTAGAGCAGCACGA
GAAATTATTTTTAGAAGTGGCTGCTCAACTGAAGGAGAATTTAAATTTTGCTAA

>g3786.t20 Gene=g3786 Length=296
MPIFTELQEKYNAEYIAGGSVQNTLRVCQWILDKPNVAAYFGCVGQDKNAEILEKRARAD
GVDVCYQKNEEQLTGRCAVLITGKHRSLIAHLAAANFFSEDHIDKNFKYVENAEYFYISG
FFLTVSPPSILKVAKHAKENNKSLLMNLSAPFISQLFKEPLMQVIPYIDLLFGNESEALT
FAKEQNFGTENLKEIGFKMVSLPKENENRPRIVILTQGSHPVLLFENNTVREFPVQEIKE
CDIVDTNGAGDGFVGGFLSQFIQKKSFDDCIAVGIRAAREIIFRSGCSTEGEFKFC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g3786.t20 CDD cd01168 adenosine_kinase 1 290 9.48318E-115
10 g3786.t20 Gene3D G3DSA:3.30.1110.10 - 1 91 6.9E-106
11 g3786.t20 Gene3D G3DSA:3.40.1190.20 - 18 286 6.9E-106
2 g3786.t20 PANTHER PTHR45769 - 1 290 8.1E-114
6 g3786.t20 PRINTS PR00989 Adenosine kinase signature 23 32 5.9E-30
3 g3786.t20 PRINTS PR00989 Adenosine kinase signature 40 54 5.9E-30
5 g3786.t20 PRINTS PR00989 Adenosine kinase signature 71 86 5.9E-30
4 g3786.t20 PRINTS PR00989 Adenosine kinase signature 107 133 5.9E-30
7 g3786.t20 PRINTS PR00989 Adenosine kinase signature 216 235 5.9E-30
1 g3786.t20 Pfam PF00294 pfkB family carbohydrate kinase 6 289 2.1E-60
9 g3786.t20 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 245 258 -
8 g3786.t20 SUPERFAMILY SSF53613 Ribokinase-like 2 288 5.14E-59

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016773 phosphotransferase activity, alcohol group as acceptor MF
GO:0006166 purine ribonucleoside salvage BP
GO:0004001 adenosine kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values