General information for g3812.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein slit.
Parent gene
- The parent gene g3812 is located on chr_3: 28103465..28158537 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3812 | g3812.t2 | isoform | g3812.t2 | 28103465 | 28158537 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon1 | 28103465 | 28103709 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS1 | 28103465 | 28103709 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon2 | 28144413 | 28144484 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS2 | 28144413 | 28144484 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon3 | 28150165 | 28150236 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS3 | 28150165 | 28150236 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon4 | 28150612 | 28150683 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS4 | 28150612 | 28150683 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon5 | 28150749 | 28151128 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS5 | 28150749 | 28151128 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon6 | 28151194 | 28151335 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS6 | 28151194 | 28151335 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon7 | 28151416 | 28151775 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS7 | 28151416 | 28151775 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon8 | 28151859 | 28152016 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS8 | 28151859 | 28152016 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon9 | 28152069 | 28152222 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS9 | 28152069 | 28152222 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon10 | 28152294 | 28152512 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS10 | 28152294 | 28152512 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon11 | 28153079 | 28153591 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS11 | 28153079 | 28153591 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon12 | 28153706 | 28153849 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS12 | 28153706 | 28153849 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon13 | 28154031 | 28155197 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS13 | 28154031 | 28155197 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon14 | 28155299 | 28155671 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS14 | 28155299 | 28155671 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon15 | 28155736 | 28155925 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS15 | 28155736 | 28155925 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon16 | 28156547 | 28156746 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS16 | 28156547 | 28156746 |
| chr_3 | g3812 | g3812.t2 | exon | g3812.t2.exon17 | 28156837 | 28158537 |
| chr_3 | g3812 | g3812.t2 | cds | g3812.t2.CDS17 | 28156837 | 28158537 |
| chr_3 | g3812 | g3812.t2 | TSS | g3812.t2 | NA | NA |
| chr_3 | g3812 | g3812.t2 | TTS | g3812.t2 | NA | NA |
Sequences
>g3812.t2 Gene=g3812 Length=6162
ATGTTATTAATAGCGAGTGTCATATTGGTAATTGCATCAGCGGTGACACAGGGTGAGCCC
TTTGGCGGTTATTATGGATCGAGCTTGAATGTTAATGGAGGTAGTGGCAGCAATGGACAC
ACAAATGGCGATATTTTGACACCAAAGTGTCCGCGCCTGTGCACTTGTACAGGCCATACA
GTCGACTGTTCTCATCGCGGTCTATCATCAGTACCAAGAAAAATTCCTTTGGACACAGAA
AGATTGGACCTTCAAGGAAACAACATAACAATTATTTATGAGTCAGATTTTATAAATTTA
TCGAAACTTAGAATTTTACAATTAACAGATAATCAACTGCACACAATTGAGAAGGATGCA
TTTGCCGATCTCGTTGCTCTTGAGAGACTACGATTAAACAACAATAAAATTAAAACACTT
CCCGATAATTTGTTGGCGAGCATGTCCAATTTAGTGCGAGTTGACTTATCAAATAATGAG
ATCGTGGCAATATCAAAGCGCATGTTTAAGGGCGTTATTGCGCTCAGAAGTCTTCAATTG
GATCACAATCAAATCGTGTGCATTGATGAGCAAGCATTAAAGAATTTACATGAACTCGAA
ATTCTCACACTTAACAACAACAACATAACAACTATGCCGCGCGAAATGTTCAGTAATATG
CCGCGACTTCGAGCGCTTCGTCTTTCTGACAATAATTTTGCATGCGATTGTCATTTGTCG
TGGCTTTCTAAATTTCTGAGAAGTTCACCAAGATTGGCACCTTATACACGATGTCATTCA
CCAAGTCAATTAAAAGGACAAAACGTGGCTGATTTGCACGATCAAGAGTTCAAATGTTCA
GGTTTGACAGAACATGCACCAATTGAATGCGGTGGCAGAAGTTTATGTCCACATCCATGT
CGATGTGCTGAGGGAATTGTTGACTGTCGTGAGAAAAGTTTATCAAATGTTCCATTGACC
TTGCCAGAAGATACAACTGAAATACGATTGGAGCAGAATTACATTACAGAAATCCCTCCG
AAAGCATTTGCAAATCATCGCCGCTTGCGAAGAATAGATTTGTCCAATAACAACATCTCG
AAAATTGCTTACGATGCTTTTGCTGGATTAAAATCTCTCAACTCACTTGTGCTATATGGC
AACAAGATCAAAGAACTGCCAGCTGGCGTATTCAAAGGATTAACATCATTGCAATTGTTG
CTACTTAATGCTAATGAGATTTCGTGCATTCGTAAAGACTCGTTCAAGGATCTAACTGGT
CTGAGCCTTTTATCACTCTATGACAACAATATTCAATCATTATCAAATGGAACATTTGAT
GCATTAAAACAAATTCAAACATTACATTTGGCACGTAATCCATTTATTTGTGATTGTAAT
CTCAAATGGCTCGCTGACTATTTGCACAAAAATCCAATTGAAACTAGCGGCGCCAAATGT
GAAGCACCAAAAAGAATGCATCGTAGAAAGATTGAATCATTAAGAGAAGAAAAATTGAAA
TGTACGGAAGATTTACGTAGCAAATATGCTGCCGATTGTCGTGCTGAGCCAATTGAATGT
CCCGCAGTTTGCCATTGTGAACGTACAACTGTCGATTGTTCAGGTCGTTCATTGAAAGAA
ATTCCACGCGATATTCCTTTATATACGACAGAACTGTTGCTGAATGACAACCAGTTGGGT
CGAATAAAATCTGATGGACTTTTTGGACGTCTGCCAAATCTCGTCAAATTGGATTTACGA
AGAAATCAAATTACTGCCATTGAACCACGTGCATTTGAAGGTGCATCGAAAATTCAGGAA
ATGTTGATTAGTGAAAATAAAATGACTGAAGTGCATAATAAAATGTTTTTGGGACTTCAT
AATTTGAAAACATTATCAATGTTTGACAACATGGTTTCTTGCGTTATGCCTGGCAGCTTC
GATCATCTAACCTCGCTTACACAACTAAACTTGGCATCAAATAATTTTGCATGCAATTGT
CATTTGGCTTGGTTCTCTGATTGGCTACGAAAGAAGCAATTAGGAGGAACGCCTGCACGC
TGTGCAACGCCAGCAAAAGTGAAAGAAGTTGCAATCAAGGAATTGCCCCATCATGAATTC
CGATGTAGCGGTGAGAGCGATCAGGGATGTTTAGGCGAAGACTACTGTCCTGCTTCTTGT
ACATGCACTGGCACGGTTGTTCGATGTTCGCGAAATTCTTTAAATGAAATTCCCCGAGGC
ATTCCGAGCGAGACTACTGAATTATATTTGGAATCAAACAACATCTCAATGATTCATGCT
GATCGTATTCGCCACTTAAAATCATTAACACGATTGGATTTGAGCAATAATCGCATCAAT
ATTCTATCGAACTACACATTTTCCAATCTCACAAAGCTTTCAACTTTGATAATAAGCTAC
AATAATCTGCAATGTGTTCAACGACATGCATTGACGGGCTTGAAAAATTTACGTGTTTTA
TCGCTACACGGCAATCAAATTTCCATGATACCAGAGGGTTCATTTAATGATCTACAATCG
ATAACTCACATTGCATTGGGAAGTAATCCATTATATTGCGATTGTTCATTAAAATGGCTT
TCTGAATGGGTAAAATTGGATTATGTTGAGCCAGGAATTGCACGATGCGCTGAACCAGAG
CGAATGAAAGATAAACTGATTTTATCAACACCAGCAAATCAGTTTGTTTGCAAAGAGAAA
GTTAGTGATGAAATTTTGTCAAAGTGTGATGCTTGCTATACATTCCCATGTAAGAACAAT
GCTGAATGTATTGTGAAGCCAGAGAAGCAATATGAATGTCGATGTGTAGCTGGTTATCAT
GGTGAACATTGTGAGCATATGATTGATGCTTGCTATGGTAATCCATGCAGAAATAATGGC
AAATGCAGTGTACTCGAGGAAGGCCGTTTCAGTTGTGATTGTTTGTCGGGCTATAAAGGA
GCAAGATGTGAAATTAACATTGATGACTGCGAAGAGCACAAATGTCAGAACAATGGCACA
TGTGTTGATGGCGTTGAATCATATACATGCAGTTGCCTGCCTGGCTTCACTGGCGAGTTT
TGTGAACAAAAAATTGAATTTTGTGGAACAGAATTTAATCCATGCGAAAATGGCGCAAAA
TGTATCGATCACTATACTCACTACATTTGTGAATGTCCAGCCGGCTTCCGTGGTGTCAAT
TGCACAGATAATATTGATGACTGCGAAAACCATATGTGCCAGAATGGTGGAACTTGTGTT
GATGGCATTAATTCATACTATTGTGAATGTCCAAGTGATTTTACTGGTAAATTTTGTGAA
GGCACACCTATGGTTGCAATGATGTATCCACAAACATCACCTTGCCAAAATCATGAATGC
AAATTTGGTGTTTGCTTCCAACCGAATCCATCTTCGTCTGAATATATGTGCAAATGCAAT
CAAGGCTATACAGGAAAACGTTGCGAATATCTGACATCACTCACTTTCCTTCATAACAAT
AGCTTCGTCGAAATGGAGCCACTAAGAATGAAACCGGAAGCAAACGTTACCGTTATTTTC
AGCACAACACAGATGAATGGTGTGCTTATGTACAATGGCAACAACAACAATGAACACTTT
GCTGTAGAGCTTTTTAACGGACGTATTCGTGTGAGCTATGATGTTGGAAATTATCCAACT
TCGACTATGTACAGCTTTGAGATGGTAGCTGATGGAAAATATCACATGGTTGAATTGATT
GCTGTTAAAAAGAACTTTACATTACGTGTAAATGGCGGACAAGCACGCTCAATTGTAAAT
GAGGGTACAAAAGAATATTTAAAGTTCTCTTCACCAATGTTCCTTGGTGGTGTTCCACCA
GAGGCTGCACAACAAGCTTACAATCAATATCACTTGAGAAACATGACAAGCTTCCAAGGA
TGTATGAAAGAAGTATGGATAAATCACAAGCAAGTTGATTTTGTTAATGCAGCGCGTCAG
CAAAAAGTTAGTCCTGGATGTGCATTGTATGATTCTGATTCAGAAAATGATGGTGAAAGT
TATCAAGATCAATTTATTCAAGAGCCACCAGAAGATGAATCGAAGGAAGATGATCCATGT
GATAATCATCAGTGCAAAAATAGCGGAAAATGTATACCAAACAATAAGGGCTCATATAAT
TGTAAATGTAAGAAAGGTTTCAGAGGTCGTTTCTGTGAACAAGGTGAGACAGCAACGGTG
TTAATGTCACGTAAAACGGTGGAGGAATACGATGAACAACCTTTCGACAAAGCCACTAAC
GTTCCATGTCACAAAGAACAAAAGAGTGACTTTTATACCGAGAATGGTTGCCGATCAGTG
AAACCCGTTAAGATTGGCAAATGTGTAGGTGGATGTGGAAATCAGCAGTGCTGTGCACCA
AAGCAAACAAGAAAGCGCAAAGTGCGTATGGTTTGCAATAAGAACAACAAAAAGAATAGT
TATATTAAGGAATTAGAAATATCTAATAATAATGATATGTTAAACGGTAATAAATATAAT
GATGATAGTAATATTAAAAATGATAACACTATGAAAAATGATGATGAAGATGAATTGTAT
ATGATGGCAGGCGATGACCCATCTGCTTACTTTTTACCATTACCAGCACCTGCTGCCCTT
GAAACTGCGTCATTGGTGGATGACGATGACTCAGATGAAGACGATGACGATGATTATCAT
CGACCTATTAGCAGCCATCATCATCATCATAGTAGTAGTGTTTCAACAACAAATTCAACA
ACTAATAATCAAATGTTAGATGTAGTAAATAATAAGAGACAACAACAACAACAAAGGAAA
GGTAATAGAAGACAAAATAATAATAGAAGTAGACATCGTAATAGCCAAAATCAGAACGAT
GGAACATCGTTTGATGAAGGCAATCCCATTAATGTAATTTCTGCATTCAATCGAACGGGT
AAGATTTACAATAAATTGCGAAAAAATGATGCTGTTAAAGTAGTCGATACACCAAGTGGT
CGCGCGGGATTCGTCTATCAAAGCAGTAGCAGCAGCAACAGCAACAGCAATAATAATCAT
CAAGAAGCTCCCTTGAGCCCATCAATCAAACAAAGTAGTAGTAGCTGGAATGATGATACA
CAATATTCACAACAAAATCAATTTGTTAATCGTAATGCAAACGATGTGAAATTGATACCA
TCATCTTCAGCTGCTGCTTCTTCGGGAGCTGATGACACAAATAACAAGAAAATTTTACCT
GTTCTCACAAAAGATGGTAAAATTGCTCTTGTGGTTCGAGGCGACACAAGTCGTCATTTT
GATGAGAATCAAAATAATGGCAGTGGCAATAGCATCAATACGAAAAAATATGAGCCAATT
ACAAACCTTACATCGATCATTACGGCCCTTAATAGTAATAATGACAATAATTTAAAACAT
AACGACAGTATTAATGTTAATTTAGCTAATGAAAGTCCAGAATTGAAGTCAATTCAGGAA
CAAAATCGTCTCATTAATCGACTGGATGACTTTTTCGCGTCTGTCACGAACAAAGTTAAG
CATATTGAAGAAGAAATTGAACACAAATTGGGAATTGATTTAGAGTCAGATTCAGATGAG
GGTCAAGAGGCTGATGATGACAGTTATCGTGGTGAAGATTCTCAAACAACAACTACAACA
GTTGAACCATTTAATGAAGATGATCGTAAAGATATATTGCTTATCAATCGACCACTTTCA
GAAGTTCTTGGTCTACCGAAGAAAACTCACTATCATTATCCACATGACCCTATGTTACAT
CCTATTATGTCAACTTCTGAAGTGCCTCATTCAACGAGACACAATGAAAATCGTAGAATT
GACAGATTAGAGACAACACTTCATCAACCACCTCCATTAACAACAACAACGACCGATTCA
AGTCAAGCTGAAGAATTTGATCTTGAAAGTCCAGAAAAAATAAATATTGCAGTAATTCCA
CGCTTCGATTCAGAGTTAGAAGAGCGATTATTTGGAAAGGGTCGCGATAATACAAATCGT
AATTTGAATGAGATTTCACAGACGAGTGGAAGTTCAGCTTCATCAATTCATAGCGCTATT
CAAGCGATGATATCAATTGCTTGTGCTTGCGCTATTTTTGGTGTCGTTGGCACTTTTTAT
CGTATTGAGCTTGTGAATAATGTTAGAATTATTTATTGGTGA
>g3812.t2 Gene=g3812 Length=2053
MLLIASVILVIASAVTQGEPFGGYYGSSLNVNGGSGSNGHTNGDILTPKCPRLCTCTGHT
VDCSHRGLSSVPRKIPLDTERLDLQGNNITIIYESDFINLSKLRILQLTDNQLHTIEKDA
FADLVALERLRLNNNKIKTLPDNLLASMSNLVRVDLSNNEIVAISKRMFKGVIALRSLQL
DHNQIVCIDEQALKNLHELEILTLNNNNITTMPREMFSNMPRLRALRLSDNNFACDCHLS
WLSKFLRSSPRLAPYTRCHSPSQLKGQNVADLHDQEFKCSGLTEHAPIECGGRSLCPHPC
RCAEGIVDCREKSLSNVPLTLPEDTTEIRLEQNYITEIPPKAFANHRRLRRIDLSNNNIS
KIAYDAFAGLKSLNSLVLYGNKIKELPAGVFKGLTSLQLLLLNANEISCIRKDSFKDLTG
LSLLSLYDNNIQSLSNGTFDALKQIQTLHLARNPFICDCNLKWLADYLHKNPIETSGAKC
EAPKRMHRRKIESLREEKLKCTEDLRSKYAADCRAEPIECPAVCHCERTTVDCSGRSLKE
IPRDIPLYTTELLLNDNQLGRIKSDGLFGRLPNLVKLDLRRNQITAIEPRAFEGASKIQE
MLISENKMTEVHNKMFLGLHNLKTLSMFDNMVSCVMPGSFDHLTSLTQLNLASNNFACNC
HLAWFSDWLRKKQLGGTPARCATPAKVKEVAIKELPHHEFRCSGESDQGCLGEDYCPASC
TCTGTVVRCSRNSLNEIPRGIPSETTELYLESNNISMIHADRIRHLKSLTRLDLSNNRIN
ILSNYTFSNLTKLSTLIISYNNLQCVQRHALTGLKNLRVLSLHGNQISMIPEGSFNDLQS
ITHIALGSNPLYCDCSLKWLSEWVKLDYVEPGIARCAEPERMKDKLILSTPANQFVCKEK
VSDEILSKCDACYTFPCKNNAECIVKPEKQYECRCVAGYHGEHCEHMIDACYGNPCRNNG
KCSVLEEGRFSCDCLSGYKGARCEINIDDCEEHKCQNNGTCVDGVESYTCSCLPGFTGEF
CEQKIEFCGTEFNPCENGAKCIDHYTHYICECPAGFRGVNCTDNIDDCENHMCQNGGTCV
DGINSYYCECPSDFTGKFCEGTPMVAMMYPQTSPCQNHECKFGVCFQPNPSSSEYMCKCN
QGYTGKRCEYLTSLTFLHNNSFVEMEPLRMKPEANVTVIFSTTQMNGVLMYNGNNNNEHF
AVELFNGRIRVSYDVGNYPTSTMYSFEMVADGKYHMVELIAVKKNFTLRVNGGQARSIVN
EGTKEYLKFSSPMFLGGVPPEAAQQAYNQYHLRNMTSFQGCMKEVWINHKQVDFVNAARQ
QKVSPGCALYDSDSENDGESYQDQFIQEPPEDESKEDDPCDNHQCKNSGKCIPNNKGSYN
CKCKKGFRGRFCEQGETATVLMSRKTVEEYDEQPFDKATNVPCHKEQKSDFYTENGCRSV
KPVKIGKCVGGCGNQQCCAPKQTRKRKVRMVCNKNNKKNSYIKELEISNNNDMLNGNKYN
DDSNIKNDNTMKNDDEDELYMMAGDDPSAYFLPLPAPAALETASLVDDDDSDEDDDDDYH
RPISSHHHHHSSSVSTTNSTTNNQMLDVVNNKRQQQQQRKGNRRQNNNRSRHRNSQNQND
GTSFDEGNPINVISAFNRTGKIYNKLRKNDAVKVVDTPSGRAGFVYQSSSSSNSNSNNNH
QEAPLSPSIKQSSSSWNDDTQYSQQNQFVNRNANDVKLIPSSSAAASSGADDTNNKKILP
VLTKDGKIALVVRGDTSRHFDENQNNGSGNSINTKKYEPITNLTSIITALNSNNDNNLKH
NDSINVNLANESPELKSIQEQNRLINRLDDFFASVTNKVKHIEEEIEHKLGIDLESDSDE
GQEADDDSYRGEDSQTTTTTVEPFNEDDRKDILLINRPLSEVLGLPKKTHYHYPHDPMLH
PIMSTSEVPHSTRHNENRRIDRLETTLHQPPPLTTTTTDSSQAEEFDLESPEKINIAVIP
RFDSELEERLFGKGRDNTNRNLNEISQTSGSSASSIHSAIQAMISIACACAIFGVVGTFY
RIELVNNVRIIYW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 55 | g3812.t2 | CDD | cd00054 | EGF_CA | 910 | 945 | 0.00113167 |
| 51 | g3812.t2 | CDD | cd00054 | EGF_CA | 948 | 984 | 2.03549E-6 |
| 50 | g3812.t2 | CDD | cd00054 | EGF_CA | 986 | 1022 | 1.03983E-10 |
| 54 | g3812.t2 | CDD | cd00054 | EGF_CA | 1030 | 1062 | 4.11407E-7 |
| 52 | g3812.t2 | CDD | cd00054 | EGF_CA | 1064 | 1100 | 3.83589E-11 |
| 56 | g3812.t2 | CDD | cd00110 | LamG | 1153 | 1308 | 4.35343E-29 |
| 53 | g3812.t2 | CDD | cd00054 | EGF_CA | 1358 | 1393 | 2.92661E-6 |
| 38 | g3812.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 161 | 1.0E-33 |
| 41 | g3812.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 162 | 283 | 2.8E-32 |
| 40 | g3812.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 294 | 510 | 2.3E-67 |
| 37 | g3812.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 519 | 710 | 2.4E-56 |
| 39 | g3812.t2 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 714 | 904 | 1.4E-54 |
| 32 | g3812.t2 | Gene3D | G3DSA:2.10.25.10 | Laminin | 905 | 949 | 5.8E-9 |
| 33 | g3812.t2 | Gene3D | G3DSA:2.10.25.10 | Laminin | 950 | 986 | 2.0E-10 |
| 36 | g3812.t2 | Gene3D | G3DSA:2.10.25.10 | Laminin | 987 | 1025 | 7.8E-14 |
| 35 | g3812.t2 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1028 | 1064 | 1.7E-10 |
| 34 | g3812.t2 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1065 | 1101 | 1.0E-12 |
| 30 | g3812.t2 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1112 | 1151 | 1.7E-6 |
| 42 | g3812.t2 | Gene3D | G3DSA:2.60.120.200 | - | 1152 | 1327 | 1.2E-38 |
| 31 | g3812.t2 | Gene3D | G3DSA:2.10.25.10 | Laminin | 1328 | 1398 | 2.5E-8 |
| 137 | g3812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1334 | 1360 | - |
| 139 | g3812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1591 | 1626 | - |
| 138 | g3812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1611 | 1626 | - |
| 141 | g3812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1667 | 1701 | - |
| 136 | g3812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1850 | 1885 | - |
| 140 | g3812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1942 | 1963 | - |
| 135 | g3812.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1948 | 1963 | - |
| 18 | g3812.t2 | PANTHER | PTHR45836:SF4 | PROTEIN SLIT | 40 | 1323 | 0.0 |
| 19 | g3812.t2 | PANTHER | PTHR45836 | SLIT HOMOLOG | 40 | 1323 | 0.0 |
| 13 | g3812.t2 | Pfam | PF01462 | Leucine rich repeat N-terminal domain | 49 | 76 | 2.3E-7 |
| 1 | g3812.t2 | Pfam | PF13855 | Leucine rich repeat | 80 | 137 | 3.0E-11 |
| 3 | g3812.t2 | Pfam | PF13855 | Leucine rich repeat | 174 | 233 | 1.5E-13 |
| 15 | g3812.t2 | Pfam | PF01463 | Leucine rich repeat C-terminal domain | 256 | 280 | 4.0E-4 |
| 5 | g3812.t2 | Pfam | PF13855 | Leucine rich repeat | 347 | 407 | 3.1E-14 |
| 12 | g3812.t2 | Pfam | PF01462 | Leucine rich repeat N-terminal domain | 520 | 546 | 3.8E-9 |
| 2 | g3812.t2 | Pfam | PF13855 | Leucine rich repeat | 597 | 656 | 1.4E-10 |
| 16 | g3812.t2 | Pfam | PF01463 | Leucine rich repeat C-terminal domain | 679 | 703 | 0.15 |
| 11 | g3812.t2 | Pfam | PF01462 | Leucine rich repeat N-terminal domain | 716 | 742 | 1.7E-8 |
| 4 | g3812.t2 | Pfam | PF13855 | Leucine rich repeat | 745 | 803 | 1.1E-11 |
| 14 | g3812.t2 | Pfam | PF01463 | Leucine rich repeat C-terminal domain | 874 | 898 | 0.019 |
| 7 | g3812.t2 | Pfam | PF00008 | EGF-like domain | 912 | 943 | 2.5E-5 |
| 9 | g3812.t2 | Pfam | PF00008 | EGF-like domain | 951 | 982 | 3.3E-5 |
| 10 | g3812.t2 | Pfam | PF00008 | EGF-like domain | 990 | 1019 | 3.7E-8 |
| 6 | g3812.t2 | Pfam | PF00008 | EGF-like domain | 1033 | 1059 | 3.5E-6 |
| 8 | g3812.t2 | Pfam | PF00008 | EGF-like domain | 1068 | 1097 | 1.2E-6 |
| 17 | g3812.t2 | Pfam | PF00054 | Laminin G domain | 1180 | 1313 | 4.6E-32 |
| 45 | g3812.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 46 | g3812.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 47 | g3812.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 13 | - |
| 49 | g3812.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 44 | g3812.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 2018 | - |
| 48 | g3812.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2019 | 2040 | - |
| 43 | g3812.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 2041 | 2053 | - |
| 117 | g3812.t2 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 933 | 944 | - |
| 123 | g3812.t2 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 933 | 944 | - |
| 122 | g3812.t2 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 972 | 983 | - |
| 129 | g3812.t2 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 972 | 983 | - |
| 131 | g3812.t2 | ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 986 | 1010 | - |
| 133 | g3812.t2 | ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 1001 | 1012 | - |
| 121 | g3812.t2 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 1010 | 1021 | - |
| 128 | g3812.t2 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 1010 | 1021 | - |
| 134 | g3812.t2 | ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 1041 | 1052 | - |
| 119 | g3812.t2 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 1050 | 1061 | - |
| 126 | g3812.t2 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 1050 | 1061 | - |
| 130 | g3812.t2 | ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 1064 | 1088 | - |
| 132 | g3812.t2 | ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 1079 | 1090 | - |
| 125 | g3812.t2 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 1088 | 1099 | - |
| 120 | g3812.t2 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 1137 | 1148 | - |
| 127 | g3812.t2 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 1137 | 1148 | - |
| 118 | g3812.t2 | ProSitePatterns | PS01186 | EGF-like domain signature 2. | 1381 | 1392 | - |
| 124 | g3812.t2 | ProSitePatterns | PS00022 | EGF-like domain signature 1. | 1381 | 1392 | - |
| 145 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 78 | 99 | 5.587 |
| 155 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 102 | 123 | 6.657 |
| 158 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 126 | 147 | 6.857 |
| 148 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 150 | 171 | 5.51 |
| 150 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 174 | 195 | 6.511 |
| 147 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 198 | 219 | 7.003 |
| 146 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 222 | 243 | 5.687 |
| 154 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 324 | 345 | 5.055 |
| 159 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 348 | 369 | 7.404 |
| 149 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 372 | 393 | 6.287 |
| 144 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 396 | 417 | 5.779 |
| 156 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 420 | 441 | 6.295 |
| 160 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 573 | 594 | 7.127 |
| 151 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 621 | 642 | 4.662 |
| 157 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 645 | 666 | 5.225 |
| 143 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 744 | 765 | 4.547 |
| 152 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 768 | 789 | 8.066 |
| 142 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 792 | 813 | 4.893 |
| 153 | g3812.t2 | ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 816 | 837 | 7.912 |
| 169 | g3812.t2 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 910 | 945 | 15.31 |
| 168 | g3812.t2 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 947 | 984 | 19.838 |
| 164 | g3812.t2 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 986 | 1022 | 24.31 |
| 167 | g3812.t2 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 1024 | 1062 | 17.543 |
| 166 | g3812.t2 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 1064 | 1100 | 23.641 |
| 163 | g3812.t2 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 1111 | 1149 | 11.713 |
| 162 | g3812.t2 | ProSiteProfiles | PS50025 | Laminin G domain profile. | 1152 | 1327 | 38.298 |
| 165 | g3812.t2 | ProSiteProfiles | PS50026 | EGF-like domain profile. | 1356 | 1393 | 19.814 |
| 161 | g3812.t2 | ProSiteProfiles | PS01225 | C-terminal cystine knot domain profile. | 1423 | 1477 | 10.333 |
| 62 | g3812.t2 | SMART | SM00013 | lrrnt1 | 49 | 81 | 2.1E-8 |
| 86 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 100 | 123 | 0.018 |
| 98 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 100 | 121 | 120.0 |
| 68 | g3812.t2 | SMART | SM00364 | LRR_bac_2 | 124 | 143 | 10.0 |
| 84 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 124 | 147 | 8.8E-4 |
| 96 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 124 | 146 | 550.0 |
| 115 | g3812.t2 | SMART | SM00368 | LRR_RI_2 | 124 | 147 | 260.0 |
| 75 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 148 | 171 | 0.54 |
| 74 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 172 | 195 | 7.6 |
| 70 | g3812.t2 | SMART | SM00364 | LRR_bac_2 | 196 | 215 | 240.0 |
| 80 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 196 | 219 | 2.9E-4 |
| 97 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 196 | 222 | 810.0 |
| 111 | g3812.t2 | SMART | SM00368 | LRR_RI_2 | 220 | 248 | 2.2 |
| 66 | g3812.t2 | SMART | SM00082 | lrrct1 | 231 | 280 | 4.2E-12 |
| 60 | g3812.t2 | SMART | SM00013 | lrrnt1 | 295 | 327 | 2.7E-7 |
| 78 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 321 | 345 | 98.0 |
| 99 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 346 | 367 | 72.0 |
| 112 | g3812.t2 | SMART | SM00368 | LRR_RI_2 | 346 | 372 | 43.0 |
| 82 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 347 | 369 | 9.2 |
| 71 | g3812.t2 | SMART | SM00364 | LRR_bac_2 | 370 | 389 | 280.0 |
| 81 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 370 | 393 | 0.0047 |
| 77 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 394 | 417 | 0.89 |
| 95 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 394 | 415 | 340.0 |
| 87 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 418 | 441 | 0.14 |
| 101 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 418 | 439 | 45.0 |
| 114 | g3812.t2 | SMART | SM00368 | LRR_RI_2 | 442 | 470 | 74.0 |
| 65 | g3812.t2 | SMART | SM00082 | lrrct1 | 453 | 502 | 1.5E-8 |
| 61 | g3812.t2 | SMART | SM00013 | lrrnt1 | 519 | 551 | 1.2E-10 |
| 85 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 571 | 594 | 4.9E-5 |
| 102 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 571 | 592 | 53.0 |
| 116 | g3812.t2 | SMART | SM00368 | LRR_RI_2 | 571 | 604 | 65.0 |
| 83 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 619 | 642 | 14.0 |
| 103 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 619 | 640 | 700.0 |
| 73 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 643 | 666 | 200.0 |
| 64 | g3812.t2 | SMART | SM00082 | lrrct1 | 654 | 703 | 2.1E-9 |
| 59 | g3812.t2 | SMART | SM00013 | lrrnt1 | 715 | 747 | 8.4E-10 |
| 69 | g3812.t2 | SMART | SM00364 | LRR_bac_2 | 766 | 785 | 110.0 |
| 72 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 766 | 789 | 0.0018 |
| 100 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 766 | 787 | 13.0 |
| 113 | g3812.t2 | SMART | SM00368 | LRR_RI_2 | 766 | 799 | 58.0 |
| 79 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 790 | 813 | 6.3 |
| 76 | g3812.t2 | SMART | SM00369 | LRR_typ_2 | 814 | 837 | 1.6E-5 |
| 94 | g3812.t2 | SMART | SM00365 | LRR_sd22_2 | 814 | 835 | 150.0 |
| 67 | g3812.t2 | SMART | SM00082 | lrrct1 | 849 | 898 | 5.4E-13 |
| 88 | g3812.t2 | SMART | SM00179 | egfca_6 | 908 | 945 | 0.2 |
| 110 | g3812.t2 | SMART | SM00181 | egf_5 | 911 | 945 | 4.7E-5 |
| 91 | g3812.t2 | SMART | SM00179 | egfca_6 | 948 | 984 | 0.021 |
| 105 | g3812.t2 | SMART | SM00181 | egf_5 | 950 | 984 | 6.4E-4 |
| 89 | g3812.t2 | SMART | SM00179 | egfca_6 | 986 | 1022 | 4.3E-10 |
| 107 | g3812.t2 | SMART | SM00181 | egf_5 | 989 | 1022 | 3.5E-7 |
| 93 | g3812.t2 | SMART | SM00179 | egfca_6 | 1024 | 1062 | 7.3E-4 |
| 108 | g3812.t2 | SMART | SM00181 | egf_5 | 1027 | 1062 | 5.9E-5 |
| 92 | g3812.t2 | SMART | SM00179 | egfca_6 | 1064 | 1100 | 8.8E-11 |
| 106 | g3812.t2 | SMART | SM00181 | egf_5 | 1067 | 1100 | 8.7E-7 |
| 109 | g3812.t2 | SMART | SM00181 | egf_5 | 1114 | 1149 | 0.0017 |
| 63 | g3812.t2 | SMART | SM00282 | LamG_3 | 1172 | 1310 | 2.1E-31 |
| 90 | g3812.t2 | SMART | SM00179 | egfca_6 | 1356 | 1393 | 0.0014 |
| 104 | g3812.t2 | SMART | SM00181 | egf_5 | 1359 | 1393 | 6.6E-5 |
| 58 | g3812.t2 | SMART | SM00041 | CT_3 | 1425 | 1484 | 3.3E-4 |
| 22 | g3812.t2 | SUPERFAMILY | SSF52058 | L domain-like | 50 | 471 | 7.56E-63 |
| 21 | g3812.t2 | SUPERFAMILY | SSF52058 | L domain-like | 519 | 866 | 8.16E-55 |
| 28 | g3812.t2 | SUPERFAMILY | SSF57196 | EGF/Laminin | 906 | 947 | 2.87E-7 |
| 24 | g3812.t2 | SUPERFAMILY | SSF57196 | EGF/Laminin | 948 | 991 | 1.39E-7 |
| 25 | g3812.t2 | SUPERFAMILY | SSF57196 | EGF/Laminin | 983 | 1025 | 5.69E-10 |
| 27 | g3812.t2 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1032 | 1069 | 5.08E-7 |
| 23 | g3812.t2 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1064 | 1109 | 2.96E-10 |
| 20 | g3812.t2 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1136 | 1327 | 1.25E-42 |
| 26 | g3812.t2 | SUPERFAMILY | SSF57196 | EGF/Laminin | 1358 | 1399 | 1.79E-7 |
| 29 | g3812.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
| 57 | g3812.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2018 | 2040 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
| GO:0005509 | calcium ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K06839 (slit 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
