Gene loci information

Transcript annotation

  • This transcript has been annotated as Casein kinase II subunit beta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3844 g3844.t5 isoform g3844.t5 28338758 28340731
chr_3 g3844 g3844.t5 exon g3844.t5.exon1 28338758 28339287
chr_3 g3844 g3844.t5 exon g3844.t5.exon2 28339365 28339461
chr_3 g3844 g3844.t5 cds g3844.t5.CDS1 28339377 28339461
chr_3 g3844 g3844.t5 exon g3844.t5.exon3 28339535 28340086
chr_3 g3844 g3844.t5 cds g3844.t5.CDS2 28339535 28339941
chr_3 g3844 g3844.t5 exon g3844.t5.exon4 28340400 28340731
chr_3 g3844 g3844.t5 TSS g3844.t5 NA NA
chr_3 g3844 g3844.t5 TTS g3844.t5 NA NA

Sequences

>g3844.t5 Gene=g3844 Length=1511
ATGATGAATAGCTGTATCGATAGGCGCTGCGACTGCTACAAAATAAGGTATTCTAGTTAA
TTTAATTAAACACCTAAAAGGCATTCTTATTTTTGGGCAATTTATATATAAATTTATATA
AGAGAGAAATGTTAAGAAAACTGTAGAACAGGGGGTGAACAAGTGTAAATGTGTAAGATA
CTACATTCGAAGAAATAAAAGTTTCTTGCATTTCTTCATTTAGTCACAAGCCCGTCAAAA
AATAATTAAAGGAAGCATTTTTTCGTTTATCAGAAACTATAATTTACTTTATCTATTCCA
AGTGTGGATAAACCAGTTGGTGGCATTAAAAGCTCTGAAGAAGTTTCTTGGATTTCATGG
TTCTGCGGTTTGCGAGGAAACGAATTTTTCTGTGAAGTTGATGAAGATTACATTCAGGAT
AAGTTTAATTTGACAGGACTAAATGAGCAAGTGCCCAACTATAGACAAGCGCTTGATATG
ATTCTTGATCTTGAGCCAGATGAGGATGAAATTGATGTTAATCCAAATCAATCAGATCTA
ATTGAGCAAGCTGCTGAGATGCTATATGGGCTTATTCATGCACGCTACATTTTAACAAAT
CGCGGAATCGCGCAAATGATTGAAAAATACCAGAGCGGCGACTTTGGTCATTGTCCACGC
GTGTATTGTGAAAGTCAGCCAATGTTACCGTTAGGTCTTAGCGATGTTCCTGGCGAAGCT
ATGGTTAAATCTTATTGCCCGAAATGCATAGACGTTTACACTCCAAAATCATCTCGCCAC
CATCATACTGATGGTGCCTATTTCGGCACTGGCTTTCCTCATATGTTGTTTATGGTTCAT
CCTGAATATCGACCAAAGCGACCTGCCAACCAATTTGTCCCAAGGTTGTATGGATTTAAA
ATTCACAATTTGGCTTATCAAATACAATTACAAGCTGCTGCGCAATTTAAACAGCCTAGA
ACAAACTAGCAATCTGAGAAGCGACTAATTAATAACAGTACTGAAGTTAGGCTTGTTTGA
ACATCAACCAAATAAATGAGAAATGGATAGAAGAATTTAATTAATTAAAATAGTTCTTCA
CTGATTGACATCATATTTAGTCGTATTTCCATAATTTGTTAAAAGAGAAAAAATCAAAAA
AGAAGAAGAAACAAGCCATTCACATAAACACACACACACACAGACATCTTTTTTTCTCCA
TAAGTTTTGTCTATGTCAACATTATTTGAAATAATAAATATCCTATTATTTAAAATGCTG
TAATCCTCCTTTTCACATCCAATCTACAGTCATTGTTTTCCTTCTATTTCCTCATTCACT
TTTACTTGTGAAAATGGATATAATATGAAAATGACTTTAAAGTAATAAAAATTGATATAA
TTATGATAATTGATTAAAGCATAAAAGAGTTATGATAATAATTATAAACTTGAGTATTTT
TATTCTAATTTATTTTTTGTTGTTGATTTTTACACAAAAGTATAGTAGTTAGTTGATGTT
GATTTTAATTC

>g3844.t5 Gene=g3844 Length=163
MILDLEPDEDEIDVNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMIEKYQSGDFGHCP
RVYCESQPMLPLGLSDVPGEAMVKSYCPKCIDVYTPKSSRHHHTDGAYFGTGFPHMLFMV
HPEYRPKRPANQFVPRLYGFKIHNLAYQIQLQAAAQFKQPRTN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g3844.t5 Gene3D G3DSA:1.10.1820.10 protein kinase ck2 holoenzyme 1 55 8.7E-19
12 g3844.t5 Gene3D G3DSA:2.20.25.20 - 56 130 2.2E-38
2 g3844.t5 PANTHER PTHR11740:SF0 CASEIN KINASE II SUBUNIT BETA 1 155 1.3E-68
3 g3844.t5 PANTHER PTHR11740 CASEIN KINASE II SUBUNIT BETA 1 155 1.3E-68
5 g3844.t5 PRINTS PR00472 Casein kinase II regulatory subunit family signature 30 51 1.5E-49
6 g3844.t5 PRINTS PR00472 Casein kinase II regulatory subunit family signature 55 76 1.5E-49
4 g3844.t5 PRINTS PR00472 Casein kinase II regulatory subunit family signature 77 98 1.5E-49
7 g3844.t5 PRINTS PR00472 Casein kinase II regulatory subunit family signature 105 122 1.5E-49
1 g3844.t5 Pfam PF01214 Casein kinase II regulatory subunit 2 141 9.0E-58
10 g3844.t5 ProSitePatterns PS01101 Casein kinase II regulatory subunit signature. 59 90 -
9 g3844.t5 SMART SM01085 CK_II_beta_2 1 141 1.4E-77
8 g3844.t5 SUPERFAMILY SSF57798 Casein kinase II beta subunit 2 151 1.7E-62

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019887 protein kinase regulator activity MF
GO:0005956 protein kinase CK2 complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed