Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable enoyl-CoA hydratase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3891 g3891.t6 TTS g3891.t6 28634277 28634277
chr_3 g3891 g3891.t6 isoform g3891.t6 28634381 28635396
chr_3 g3891 g3891.t6 exon g3891.t6.exon1 28634381 28634847
chr_3 g3891 g3891.t6 cds g3891.t6.CDS1 28634381 28634847
chr_3 g3891 g3891.t6 exon g3891.t6.exon2 28634912 28635229
chr_3 g3891 g3891.t6 cds g3891.t6.CDS2 28634912 28635229
chr_3 g3891 g3891.t6 exon g3891.t6.exon3 28635324 28635396
chr_3 g3891 g3891.t6 cds g3891.t6.CDS3 28635324 28635396
chr_3 g3891 g3891.t6 TSS g3891.t6 28635461 28635461

Sequences

>g3891.t6 Gene=g3891 Length=858
ATGGCTTCAATCACAAAGATCGTATCATCATTATCACGTGCACCTGCATTAAAGCAACAA
TACAGACTTTTCTCAAACAAATATGAATTTATTGTAAAAGATGTTGCTGGCGAGAAAAAG
AATGTTGGTTTGATTACATTGAATCGACCAAAAGCTCTTAATGCTTTAAATAAAGGTTTA
ATGACAGAAGTTGCCAGAGCATTGAATGAATTTGATTCTGATAAATCTATTGGTGCAATT
GTCATAACTGGAAATGAGAAAGCTTTTGCTGCCGGTGCCGATATCAAAGAAATGCAGGGT
AACACATATGCCGATTGCATTCTTAATAACTTTTTAGCTGATTGGACAAAAGTTGCAAGC
ACAAAAAAACCAGTCATTGCAGCAGTTAATGGATATGCTCTTGGAGGCGGTTGTGAATTA
GCAATGATGTGCGATATAATTTATGCTGGAGATAAAGCTCGTTTCGGTCAACCTGAGATC
AATATTGGAACAATTCCCGGAGCTGGCGGTACACAACGTTTAACACGCGTGATTGGAAAA
TCAAAGGCAATGGAAATGTGTTTGACAGGAAACATGATTACAGCTGAAGAAGCTGAAAAG
TCAGGTTTAGTAAGCAAAGTGTTTCCAGCTGATCAGTTAGTCAAAGAGGCAGTTAAACTC
GGTGAAAAAATTAGTGCTCAATCGCCATTGACAGTTGCTCTTGCAAAAGAAGCCGTTAAT
GTTGCATATGAGAGCACACTTGCTGAAGGTTTGAGATTTGAGAGAAGATACTTCCACGCA
ACATTCTCAACCAAAGATCAGAAAGAAGGAATGTTGGCATTTATTGAGAAACGTGCACCT
AACTTTACCAGCGAATAA

>g3891.t6 Gene=g3891 Length=285
MASITKIVSSLSRAPALKQQYRLFSNKYEFIVKDVAGEKKNVGLITLNRPKALNALNKGL
MTEVARALNEFDSDKSIGAIVITGNEKAFAAGADIKEMQGNTYADCILNNFLADWTKVAS
TKKPVIAAVNGYALGGGCELAMMCDIIYAGDKARFGQPEINIGTIPGAGGTQRLTRVIGK
SKAMEMCLTGNMITAEEAEKSGLVSKVFPADQLVKEAVKLGEKISAQSPLTVALAKEAVN
VAYESTLAEGLRFERRYFHATFSTKDQKEGMLAFIEKRAPNFTSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g3891.t6 CDD cd06558 crotonase-like 41 224 2.61994E-77
7 g3891.t6 Gene3D G3DSA:3.90.226.10 - 26 227 6.9E-80
6 g3891.t6 Gene3D G3DSA:1.10.12.10 - 228 284 1.2E-26
2 g3891.t6 PANTHER PTHR11941:SF54 ENOYL-COA HYDRATASE, MITOCHONDRIAL 35 280 6.8E-94
3 g3891.t6 PANTHER PTHR11941 ENOYL-COA HYDRATASE-RELATED 35 280 6.8E-94
1 g3891.t6 Pfam PF00378 Enoyl-CoA hydratase/isomerase 38 284 3.1E-92
5 g3891.t6 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 126 146 -
4 g3891.t6 SUPERFAMILY SSF52096 ClpP/crotonase 24 284 4.67E-89

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed