Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable enoyl-CoA hydratase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3891 g3891.t7 TTS g3891.t7 28634277 28634277
chr_3 g3891 g3891.t7 isoform g3891.t7 28634381 28635396
chr_3 g3891 g3891.t7 exon g3891.t7.exon1 28634381 28634847
chr_3 g3891 g3891.t7 cds g3891.t7.CDS1 28634381 28634847
chr_3 g3891 g3891.t7 exon g3891.t7.exon2 28634912 28634965
chr_3 g3891 g3891.t7 cds g3891.t7.CDS2 28634912 28634965
chr_3 g3891 g3891.t7 exon g3891.t7.exon3 28635029 28635229
chr_3 g3891 g3891.t7 cds g3891.t7.CDS3 28635029 28635229
chr_3 g3891 g3891.t7 exon g3891.t7.exon4 28635324 28635396
chr_3 g3891 g3891.t7 cds g3891.t7.CDS4 28635324 28635396
chr_3 g3891 g3891.t7 TSS g3891.t7 28635461 28635461

Sequences

>g3891.t7 Gene=g3891 Length=795
ATGGCTTCAATCACAAAGATCGTATCATCATTATCACGTGCACCTGCATTAAAGCAACAA
TACAGACTTTTCTCAAACAAATATGAATTTATTGTAAAAGATGTTGCTGGCGAGAAAAAG
AATGTTGGTTTGATTACATTGAATCGACCAAAAGCTCTTAATGCTTTAAATAAAGGTTTA
ATGACAGAAGTTGCCAGAGCATTGAATGAATTTGATTCTGATAAATCTATTGGTGCAATT
GTCATAACTGGAAATGAGAAAGCTTTTGCTGCCGCTGATTGGACAAAAGTTGCAAGCACA
AAAAAACCAGTCATTGCAGCAGTTAATGGATATGCTCTTGGAGGCGGTTGTGAATTAGCA
ATGATGTGCGATATAATTTATGCTGGAGATAAAGCTCGTTTCGGTCAACCTGAGATCAAT
ATTGGAACAATTCCCGGAGCTGGCGGTACACAACGTTTAACACGCGTGATTGGAAAATCA
AAGGCAATGGAAATGTGTTTGACAGGAAACATGATTACAGCTGAAGAAGCTGAAAAGTCA
GGTTTAGTAAGCAAAGTGTTTCCAGCTGATCAGTTAGTCAAAGAGGCAGTTAAACTCGGT
GAAAAAATTAGTGCTCAATCGCCATTGACAGTTGCTCTTGCAAAAGAAGCCGTTAATGTT
GCATATGAGAGCACACTTGCTGAAGGTTTGAGATTTGAGAGAAGATACTTCCACGCAACA
TTCTCAACCAAAGATCAGAAAGAAGGAATGTTGGCATTTATTGAGAAACGTGCACCTAAC
TTTACCAGCGAATAA

>g3891.t7 Gene=g3891 Length=264
MASITKIVSSLSRAPALKQQYRLFSNKYEFIVKDVAGEKKNVGLITLNRPKALNALNKGL
MTEVARALNEFDSDKSIGAIVITGNEKAFAAADWTKVASTKKPVIAAVNGYALGGGCELA
MMCDIIYAGDKARFGQPEINIGTIPGAGGTQRLTRVIGKSKAMEMCLTGNMITAEEAEKS
GLVSKVFPADQLVKEAVKLGEKISAQSPLTVALAKEAVNVAYESTLAEGLRFERRYFHAT
FSTKDQKEGMLAFIEKRAPNFTSE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g3891.t7 CDD cd06558 crotonase-like 41 203 1.83192E-68
9 g3891.t7 Gene3D G3DSA:3.90.226.10 - 26 91 3.3E-16
8 g3891.t7 Gene3D G3DSA:3.90.226.10 - 92 206 1.6E-48
7 g3891.t7 Gene3D G3DSA:1.10.12.10 - 207 263 1.0E-26
3 g3891.t7 PANTHER PTHR11941:SF54 ENOYL-COA HYDRATASE, MITOCHONDRIAL 35 259 2.2E-82
4 g3891.t7 PANTHER PTHR11941 ENOYL-COA HYDRATASE-RELATED 35 259 2.2E-82
2 g3891.t7 Pfam PF00378 Enoyl-CoA hydratase/isomerase 38 91 3.6E-15
1 g3891.t7 Pfam PF00378 Enoyl-CoA hydratase/isomerase 93 263 1.6E-64
6 g3891.t7 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 105 125 -
5 g3891.t7 SUPERFAMILY SSF52096 ClpP/crotonase 24 263 5.3E-81

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed