Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g3913 | g3913.t13 | TSS | g3913.t13 | 28849717 | 28849717 |
chr_3 | g3913 | g3913.t13 | isoform | g3913.t13 | 28849749 | 28850879 |
chr_3 | g3913 | g3913.t13 | exon | g3913.t13.exon1 | 28849749 | 28849952 |
chr_3 | g3913 | g3913.t13 | cds | g3913.t13.CDS1 | 28849749 | 28849952 |
chr_3 | g3913 | g3913.t13 | exon | g3913.t13.exon2 | 28850010 | 28850091 |
chr_3 | g3913 | g3913.t13 | cds | g3913.t13.CDS2 | 28850010 | 28850091 |
chr_3 | g3913 | g3913.t13 | exon | g3913.t13.exon3 | 28850152 | 28850418 |
chr_3 | g3913 | g3913.t13 | cds | g3913.t13.CDS3 | 28850152 | 28850418 |
chr_3 | g3913 | g3913.t13 | exon | g3913.t13.exon4 | 28850485 | 28850661 |
chr_3 | g3913 | g3913.t13 | cds | g3913.t13.CDS4 | 28850485 | 28850661 |
chr_3 | g3913 | g3913.t13 | exon | g3913.t13.exon5 | 28850728 | 28850879 |
chr_3 | g3913 | g3913.t13 | cds | g3913.t13.CDS5 | 28850728 | 28850879 |
chr_3 | g3913 | g3913.t13 | TTS | g3913.t13 | 28850940 | 28850940 |
>g3913.t13 Gene=g3913 Length=882
ATGAAATTTGTGGCTTTATTCTTGACAATTTTTGTTGCTTTTGCGACTGCAGAAATTGAC
AATCAAGTTGATTGGTCAAATGTCTCACCAATTTTTCAACTAATTAAGCAACGTTTAGAT
GAACGCAAAAATGAACCTCTTCAACCACCAAATCGAAGAATTGTCAATGGGCAAGAAGCA
GAACCACATCAATTCCCCTACCAAATCGCTTTACTTATTCAATCACCAACTGGCACTGGT
TTGTGCGGTGGATCAGTCATTTCAGCGACAGCTGCATTGACAGCTGCTCATTGTACATCA
ACCGGTGTAACTGGTTATCTTTTGATTGCTGGTGCAGTAAATCGCGTGCAAATCGAGCCA
CAACAACAGAGACGTCAGGTACCATCTAGTGCTTTCGTTCCACATCCTCAATATGGCCCA
CTTCGTTTAGTTAATGATATTGCTGTCATTCGTGTTGCAGAAGCATTTACTTTGAATAAT
GTAGTTCAAGCTATTGCTTTAGCATCAAATCCAAATGAACTTCATGTTGACGCTGTAGTG
ACTGCTTCAGGTTGTTTTGGACGATATAGTGATAGCCATTCACGCACTTCAGAAGTCGTT
TTGTTCACACGAAAGACTGTCATTTCAAATGCTCAATGTTCACAGAGTTTCCCACTTTTG
GTTGTTGATTCAACCATTTGTGCTGTTGGAACTGCTGGAATTAATAATGCAGTTTGTAAT
GGTGATTCAGGTGGTCCATTGACTATTATTAGAAATAATGAATCATATCAAGTTGGTGTT
GTTTCATTTGGTAGTCCACAAGGATGTGAAACTGGAATGCCAGATGGATATGCTCGTGTT
TCACACTTTTTCACATGGATTTCTCAAACTGCTGGCATATAA
>g3913.t13 Gene=g3913 Length=293
MKFVALFLTIFVAFATAEIDNQVDWSNVSPIFQLIKQRLDERKNEPLQPPNRRIVNGQEA
EPHQFPYQIALLIQSPTGTGLCGGSVISATAALTAAHCTSTGVTGYLLIAGAVNRVQIEP
QQQRRQVPSSAFVPHPQYGPLRLVNDIAVIRVAEAFTLNNVVQAIALASNPNELHVDAVV
TASGCFGRYSDSHSRTSEVVLFTRKTVISNAQCSQSFPLLVVDSTICAVGTAGINNAVCN
GDSGGPLTIIRNNESYQVGVVSFGSPQGCETGMPDGYARVSHFFTWISQTAGI
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
15 | g3913.t13 | CDD | cd00190 | Tryp_SPc | 54 | 290 | 5.62252E-66 |
9 | g3913.t13 | Gene3D | G3DSA:2.40.10.10 | - | 48 | 292 | 1.1E-54 |
2 | g3913.t13 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 24 | 290 | 1.1E-80 |
3 | g3913.t13 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 24 | 290 | 1.1E-80 |
5 | g3913.t13 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 83 | 98 | 6.4E-10 |
4 | g3913.t13 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 142 | 156 | 6.4E-10 |
6 | g3913.t13 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 236 | 248 | 6.4E-10 |
1 | g3913.t13 | Pfam | PF00089 | Trypsin | 54 | 287 | 1.8E-45 |
11 | g3913.t13 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
12 | g3913.t13 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
13 | g3913.t13 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
14 | g3913.t13 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 17 | - |
10 | g3913.t13 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 293 | - |
18 | g3913.t13 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 93 | 98 | - |
19 | g3913.t13 | ProSitePatterns | PS00135 | Serine proteases, trypsin family, serine active site. | 237 | 248 | - |
20 | g3913.t13 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 54 | 292 | 24.469 |
17 | g3913.t13 | SMART | SM00020 | trypsin_2 | 53 | 287 | 3.5E-59 |
7 | g3913.t13 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 41 | 291 | 1.6E-62 |
8 | g3913.t13 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
16 | g3913.t13 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 17 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0004252 | serine-type endopeptidase activity | MF |
GO:0006508 | proteolysis | BP |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed