General information for g3960.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha.
Parent gene
- The parent gene g3960 is located on chr_3: 29284314..29285328 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3960 | g3960.t1 | TSS | g3960.t1 | 29279442 | 29279442 |
| chr_3 | g3960 | g3960.t1 | isoform | g3960.t1 | 29279504 | 29285212 |
| chr_3 | g3960 | g3960.t1 | exon | g3960.t1.exon1 | 29279504 | 29279630 |
| chr_3 | g3960 | g3960.t1 | cds | g3960.t1.CDS1 | 29279504 | 29279630 |
| chr_3 | g3960 | g3960.t1 | exon | g3960.t1.exon2 | 29279693 | 29281554 |
| chr_3 | g3960 | g3960.t1 | cds | g3960.t1.CDS2 | 29279693 | 29281554 |
| chr_3 | g3960 | g3960.t1 | exon | g3960.t1.exon3 | 29281618 | 29281831 |
| chr_3 | g3960 | g3960.t1 | cds | g3960.t1.CDS3 | 29281618 | 29281831 |
| chr_3 | g3960 | g3960.t1 | exon | g3960.t1.exon4 | 29281888 | 29284204 |
| chr_3 | g3960 | g3960.t1 | cds | g3960.t1.CDS4 | 29281888 | 29284204 |
| chr_3 | g3960 | g3960.t1 | exon | g3960.t1.exon5 | 29284268 | 29284314 |
| chr_3 | g3960 | g3960.t1 | cds | g3960.t1.CDS5 | 29284268 | 29284314 |
| chr_3 | g3960 | g3960.t1 | exon | g3960.t1.exon6 | 29284391 | 29284544 |
| chr_3 | g3960 | g3960.t1 | cds | g3960.t1.CDS6 | 29284391 | 29284544 |
| chr_3 | g3960 | g3960.t1 | exon | g3960.t1.exon7 | 29284603 | 29285212 |
| chr_3 | g3960 | g3960.t1 | cds | g3960.t1.CDS7 | 29284603 | 29285212 |
| chr_3 | g3960 | g3960.t1 | TTS | g3960.t1 | NA | NA |
Sequences
>g3960.t1 Gene=g3960 Length=5331
ATGTCTAAAATCGATGAAGAAGAAATTGTGAAAGCACTTAGTTTAGAGGAAGCAGCTCTT
AATGAGTTTAAAAGACGGAAAAATTCGTGTCCAGCTCCACAGAGTCACTCGAAAATTGCT
TTAAATGACAATAAACCAAATAATTCACTCTATTCATCATCTTCATCATCAAATATTTCA
AGACCAATTGATGAGTTAGATTTAATTTCATTCACTAGTGATATTCAAGAAAGTGCTCAT
AATGCAAGAAAAAAAACTGATGACGATCATTTTAATAAGCTTAAAGAGTCAATATTAAAG
TTAAACGATAATCGTAATCAGCTGCAAAAGCAACTAGTTCCATATAACAATCCTAATCAT
ATATATAGTGGAACAAATAATGTTAATCAGTTTTACAGTCAACAAATGTATTTCAATTCA
TCGCCTTATTCGCAAATTCCGAGAATCGGATTTGAAAACTTTATGCCTTATGGATTTCAT
TCACCGCAGCAGCAGCACCAGCTACAACAACAACAAACTTATGCATTTTCTCCACAACAA
TCTCAAATATGGAATCGCCCTTCAATTCAAGCAGCTTCTAATTCTTCTTCATCTTCTACT
AACACAATTTATTCGCCTCTATCTACATCTTCACAAAGTTTAGTAAGAAGCCAAACGAGA
TTATCAGAAACAAATTTGGCCATAAGAAAACCCGAGTCTGTTAAATCGTCACAGCAAAGC
AGCAATAATAATTCATCATTATCAACAATAAAAGATTTGATAAATTTAGATGATGCTGAT
GATTTAAATTTCATCGCAAATATTTTACAAGCTTTTGATCCGCTAATTGCCAAAAATGAA
GAAGCAAGTAATTCTTATTATTCGGATCAAGATCCTTTTGACTATATATATAGCGGTGGA
ACACAATACTCAGATCCACTCTATGAAGCAGTCATTCGAAGTGATCGTTCAGTCATTTCA
CCAAAAAATCATTCAGATCAAGATATATGTCAATATTACATAGCAGCATCTTCATCACCT
TCAACTTTACATAGGAAAATTGAAGAAACAAGTAATGAACAAGAACCACCACCATTACCA
CCTCGAAATTCATCGAGAACAGTTCAAGAAGAGACGTCGACTAGTCAACAAATTTATAAC
AATCAATACTCGAAAAAATTGTATGAAAACATTGTAGAATGTAGAAAATTTGATAAAGAT
TCTTTGGCATTCTACACAATGGTAAAAGAATTGCGATCGAAGTATCTTTATAATGATTAT
ACTTCAAACATAGGTCATATTGTTGCAGCTAAACTTGATAGCAAATATCTCAATGTATCA
AGTATTAAAATTTTAGTTTATCCCTCTATTGAATGCTACAAGGAAGGAAGCATTTATCAG
CAAGCTGCAAGAAGCAAGTTATTTGAAAATAATTATCAAAAACTTGATAACTATTTAGCA
CCAGTCGTTTTCACATGCGATATTGAGTCAAGCGTGATGCATGTTATTATGCAGACTTTG
GCAAGTCTTGAAAGTGAAATTACTGGAAGTGCTGAAATGTTTGCACTTAAAACTATCGGT
TCGCAAGAATGGTTGTCATATAATTCATGCCTTTCACAATTGGAATACATTCACAATAGT
ATTAAATTAGAAAAAGACGTTCTATTGGGACTATTTCCAAGAAAAGACGAATATATAAAA
GTAATTGCAAGAACGTATCAAGATGATATTCGTGATGCTGATTTAAAAATTGAAAATATT
GTACCAACTGATACAAATACATCCATCAGTTTCGAATCATTAATTATTTTATTAGAGACT
TTAGAAATGGAAATTGACAAATTAGAATCAGCAAGCGCCACACAGACTTATTCAACATTT
AATGCATCTGGTGTTGTTCAAGCTGTTAAAGCCATTTGTGCATTATTAGGTGCTATAGAT
ACTTTTGAATTACATAAGGCAATAAATAATTTGAAAGACACTTGTGATGAACAAATTCGA
CAGTTACAAAATTCAAATTCATTAGGAATGCATTCAAGATCAACTGTGAAAATTGAATAT
GAAAAAGGAAATTATGCACAAGTCTCATTAAGACCGAGAAGTGTGAGTGAAGAAATTAAA
TATCGATGTGATGAAGTACGAGATTCTGTTCAACATCTTCTTGAAGTCTACAGTCAAGCA
TTTCAAGTTAATTTTTCTGTCAATAGACCACAATGGCAAAGTGCAACAGTTAGTATTTCT
ACAGTGCAACAAAACGTCATGTTAAACGTTATGGCACTTCATCGCCCACCACCTCAATGG
AAATACGACGAATATACTTTAGGAATACAAATTTTTCATGGCACTAGATTTCTCAGTGAT
CCACTTGTTACTCAATGTTCAAACAGCACAATTGGGTTTTTCCCTCGTTTAACTTTTGAT
ATGTGGATGAATTTTGATGATGTCTCTGTGTGCTCTTTACCACGTGAATCAAGAATTGTT
TTTGTGCTTTATGGCTGCTTAAAGCAGCCTGTTGATGGTCAATCATCATCAAATGATAAT
AATCAAAGTAATAACAATAGCAACAATCAAGAAAATCAATCTATAAAAGAAGAATTAGGA
TGGACTTCAATTCAATTTTTTGATTTTGAAGGACAAATGATTCAAGGAACCTATTTTCTT
TCACTCTGGCCTCCATCAAATGACAAATATTACTGCCCTTCGCCACCAAAAGGAACTCAT
CCTCAAGGTGATTACTGTCCAATATTGAGCATCGAAATTCCAACATATGGAGGTCATCTT
GTCTTTCCTGACGTTATGATTAACATTAATTTACCAAAACTTGATTTTGAATGCTTAGAT
AGAAATTTACAAGAAGAATTAATTGATACAATTGATGGTCAAGGATTTTTATTTAATCAA
ATTGATAAAAGAGAAGTATTATGGGAAAAAAGAAATTATTTAAATAACTTTCCTAGAGCT
TTACCAAAAGTATTAAACACTGCTCATAGCTGGGACTATGCATCATTGTCTGATCTTCAT
GGCCTAGTCAGTAATTGGTCAGCATTAAAGCCTTTGGAAGCAATTGAATTACTTTTACCC
CGTTTTCCTGATCTTTTTGTGAGACATCAAGCAGTTAAATGGATATCAAAAATGAATGAA
CATGAACTCGCTGATTATTTACCGCAATTATTGCAAGCTTTAAGATTTGATTGTTATGAA
TCTTCACCTTTGGCTTGCTTTCTTCTTGGTAGATCGCTTGACTCACCAAGAGTTGCACAT
TATTTATATTGGCTGCTTATTCAAAATTTACCAGGAGATTGTCCACAAAATACTATGGAT
ACTACAAATCAAATTTATGAAGACAACTTTTTATTGTTACAATGTAGATTTCATAGAAGA
AATCAATTGATGCTTAGATCTTTGTTAGCCATTTGTGGTGAAAGCCTATGCAAAAGATTC
TTATCACAAAATCTTTTATGCAAAGCATTAGACGATTGTGCAAAAAGTGTTAAAGTTGCC
AAAGAATCATTAAAATTACCAATACTTCGTCAAAGTGTTGAAACTGTCCATCAAATTCTT
AGTGAAAATCCAACAAGTTTACCTATTTCTCCTGGTCTTGAGGTTAAGGGAGTTGTTGCA
AAAACTTGCTCTTACTTTAACTCAAATACTTTGCCATTAAAAATTAATTTCTTAGGACCA
GATGAATTAATCATTCCAGCAATTTTCAAATGCGGCGATGATCTTCAACAAGACATGCTT
ACACTACAAATTGTACGCATAATTGATAAAATGTGGCTGAAAGAAGGTTTAGATCTTAAA
ATGGTATCTTTTCAATGCATTCCAACTGGATTTAAAAAAGGAATGATTGAAATGATCACA
AATGCAGAAACATTAAGAAAAATTCAAGTTGAATGGGGATTGACTGGTTCATTCAAAGAT
AAACCGATTGCAGAATGGCTTCAGAAACAAAATCCTAATCAACTCGAATATCAGAGAGCA
GTGGATAATTTTACATCATCATGTGCAGGCTACAGTATTTTAACATATATTCTTGGTATT
TGTGATCGTCACAACGATAACATTTTGATTAAATCTAGCGGACACATTTTTCATATTGAT
TTCGGAAAATTTCTTGGTGATGCACAAATGTTTGGAAATTTTAAACGTGATCGTACACCA
TTCGTTTTAACCTCTGATATGGCTTATGTGATAAATGGTGGCGATAGACCATCTTCAAAG
TTTCACAATTTTGTTGATTTATGTTGTAAAGCTTTTAATATTGTTAGAAAACATGGAGAT
TTATTGTTACACATTTTTGCATTGATGGCATCTAGTGGTATTCCAGGAATCACAAGTGAT
GCAGTAAATTATGTTCGAAATGCTCTCATGCCAGGTGCATCAAATCCTGAGGCAGCAGCT
AATTTTGCGAAAATGATTCATGTCTCATTAAAAAGTTGGTTCACTCAGTTCAACTTTTTC
CTTCATAATCTCGCCCAAATGCGATTCAATAATCAAGGTGAAGGAGGAGAATTGCTGAGT
TTTGTACCTAAAACATATACAGTTGCACAAGAGGGAGCAATACAAAATATAACTGTTCAT
GGTTATCAAAAAAGATATGATTTAGAGAAATATTACACATATATTTTGATTATATATCGT
CAAAATCATCCCGATCCAGTATATTTGTTTCGTTCATATAAAGAATTCTGTGAATTGCAT
CAAAAACTCTGTTGCTTCTTTCCATTAGCTCGTCTTCATAGTCTGCAAAGTGGCATCAGT
GTTGGAAGATCTAATATTAAAACTGTTGCTGAGAGACGTTTACCAGAAGTTAGAAAGTTT
ATTAACTCTTTGCTAAATTCATCGACTGAAATTATTAATTCTGACTTGGTCATTACATTT
TTCCACCCAATATTAAGAGATCAACAAGAATCTGACATTCATGCACCTAAAATGCGAGAA
GATAAAAATAACGCAGAAAACAATATTGGAGGTGAAATCAAATTTTCAATCCACTATCAT
AGAGACACTTTTATCGTATTTATCCATCACGCACGAGGACTGCCTTTAACAACAAGTGGG
CAAGAGCCAAACACATACGTAAAAACTTACTTAACTCCTGATCGTTCTAAAATAACAAAA
AGAAAAACACGAGTTGTAAAGAAAAGCTGTTTTCCTAGTTTTATGGAAACATTAGAATAT
CGAATGCCAATTCAAGTTATCAAATTGAAGACGCTTCGAATTACAATTTGGAATCACGAT
ACACTACAAGAAAATGAATTTCTTGGTGGCGTTCAGATACCATTAGTTGATTTAAATTTG
AAAGAAGAAATTGTTGGATGGCATAAGCTTGTTTATCTGACAAGATCTTAA
>g3960.t1 Gene=g3960 Length=1776
MSKIDEEEIVKALSLEEAALNEFKRRKNSCPAPQSHSKIALNDNKPNNSLYSSSSSSNIS
RPIDELDLISFTSDIQESAHNARKKTDDDHFNKLKESILKLNDNRNQLQKQLVPYNNPNH
IYSGTNNVNQFYSQQMYFNSSPYSQIPRIGFENFMPYGFHSPQQQHQLQQQQTYAFSPQQ
SQIWNRPSIQAASNSSSSSTNTIYSPLSTSSQSLVRSQTRLSETNLAIRKPESVKSSQQS
SNNNSSLSTIKDLINLDDADDLNFIANILQAFDPLIAKNEEASNSYYSDQDPFDYIYSGG
TQYSDPLYEAVIRSDRSVISPKNHSDQDICQYYIAASSSPSTLHRKIEETSNEQEPPPLP
PRNSSRTVQEETSTSQQIYNNQYSKKLYENIVECRKFDKDSLAFYTMVKELRSKYLYNDY
TSNIGHIVAAKLDSKYLNVSSIKILVYPSIECYKEGSIYQQAARSKLFENNYQKLDNYLA
PVVFTCDIESSVMHVIMQTLASLESEITGSAEMFALKTIGSQEWLSYNSCLSQLEYIHNS
IKLEKDVLLGLFPRKDEYIKVIARTYQDDIRDADLKIENIVPTDTNTSISFESLIILLET
LEMEIDKLESASATQTYSTFNASGVVQAVKAICALLGAIDTFELHKAINNLKDTCDEQIR
QLQNSNSLGMHSRSTVKIEYEKGNYAQVSLRPRSVSEEIKYRCDEVRDSVQHLLEVYSQA
FQVNFSVNRPQWQSATVSISTVQQNVMLNVMALHRPPPQWKYDEYTLGIQIFHGTRFLSD
PLVTQCSNSTIGFFPRLTFDMWMNFDDVSVCSLPRESRIVFVLYGCLKQPVDGQSSSNDN
NQSNNNSNNQENQSIKEELGWTSIQFFDFEGQMIQGTYFLSLWPPSNDKYYCPSPPKGTH
PQGDYCPILSIEIPTYGGHLVFPDVMININLPKLDFECLDRNLQEELIDTIDGQGFLFNQ
IDKREVLWEKRNYLNNFPRALPKVLNTAHSWDYASLSDLHGLVSNWSALKPLEAIELLLP
RFPDLFVRHQAVKWISKMNEHELADYLPQLLQALRFDCYESSPLACFLLGRSLDSPRVAH
YLYWLLIQNLPGDCPQNTMDTTNQIYEDNFLLLQCRFHRRNQLMLRSLLAICGESLCKRF
LSQNLLCKALDDCAKSVKVAKESLKLPILRQSVETVHQILSENPTSLPISPGLEVKGVVA
KTCSYFNSNTLPLKINFLGPDELIIPAIFKCGDDLQQDMLTLQIVRIIDKMWLKEGLDLK
MVSFQCIPTGFKKGMIEMITNAETLRKIQVEWGLTGSFKDKPIAEWLQKQNPNQLEYQRA
VDNFTSSCAGYSILTYILGICDRHNDNILIKSSGHIFHIDFGKFLGDAQMFGNFKRDRTP
FVLTSDMAYVINGGDRPSSKFHNFVDLCCKAFNIVRKHGDLLLHIFALMASSGIPGITSD
AVNYVRNALMPGASNPEAAANFAKMIHVSLKSWFTQFNFFLHNLAQMRFNNQGEGGELLS
FVPKTYTVAQEGAIQNITVHGYQKRYDLEKYYTYILIIYRQNHPDPVYLFRSYKEFCELH
QKLCCFFPLARLHSLQSGISVGRSNIKTVAERRLPEVRKFINSLLNSSTEIINSDLVITF
FHPILRDQQESDIHAPKMREDKNNAENNIGGEIKFSIHYHRDTFIVFIHHARGLPLTTSG
QEPNTYVKTYLTPDRSKITKRKTRVVKKSCFPSFMETLEYRMPIQVIKLKTLRITIWNHD
TLQENEFLGGVQIPLVDLNLKEEIVGWHKLVYLTRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 25 | g3960.t1 | CDD | cd04012 | C2A_PI3K_class_II | 737 | 923 | 3.5514E-52 |
| 26 | g3960.t1 | CDD | cd05166 | PI3Kc_II | 1138 | 1486 | 0.0 |
| 24 | g3960.t1 | CDD | cd08381 | C2B_PI3K_class_II | 1650 | 1770 | 1.39259E-47 |
| 23 | g3960.t1 | Coils | Coil | Coil | 91 | 111 | - |
| 22 | g3960.t1 | Coils | Coil | Coil | 591 | 611 | - |
| 21 | g3960.t1 | Coils | Coil | Coil | 648 | 668 | - |
| 19 | g3960.t1 | Gene3D | G3DSA:2.60.40.150 | - | 758 | 923 | 9.9E-26 |
| 17 | g3960.t1 | Gene3D | G3DSA:1.25.40.70 | - | 933 | 1109 | 4.5E-43 |
| 15 | g3960.t1 | Gene3D | G3DSA:3.30.1010.10 | - | 1135 | 1280 | 1.6E-37 |
| 18 | g3960.t1 | Gene3D | G3DSA:1.10.1070.11 | - | 1281 | 1495 | 8.1E-76 |
| 16 | g3960.t1 | Gene3D | G3DSA:3.30.1520.10 | PX domain | 1496 | 1634 | 2.4E-31 |
| 20 | g3960.t1 | Gene3D | G3DSA:2.60.40.150 | - | 1635 | 1774 | 5.6E-30 |
| 34 | g3960.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 56 | - |
| 38 | g3960.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 56 | - |
| 37 | g3960.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 245 | - |
| 36 | g3960.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 376 | - |
| 35 | g3960.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 853 | - |
| 7 | g3960.t1 | PANTHER | PTHR10048:SF64 | LD28067P | 350 | 1534 | 0.0 |
| 8 | g3960.t1 | PANTHER | PTHR10048 | PHOSPHATIDYLINOSITOL KINASE | 350 | 1534 | 0.0 |
| 2 | g3960.t1 | Pfam | PF00794 | PI3-kinase family, ras-binding domain | 477 | 552 | 4.1E-10 |
| 6 | g3960.t1 | Pfam | PF00792 | Phosphoinositide 3-kinase C2 | 763 | 892 | 5.5E-12 |
| 5 | g3960.t1 | Pfam | PF00613 | Phosphoinositide 3-kinase family, accessory domain (PIK domain) | 962 | 1104 | 1.9E-31 |
| 1 | g3960.t1 | Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 1226 | 1438 | 2.2E-55 |
| 4 | g3960.t1 | Pfam | PF00787 | PX domain | 1549 | 1622 | 1.5E-4 |
| 3 | g3960.t1 | Pfam | PF00168 | C2 domain | 1665 | 1770 | 1.5E-15 |
| 33 | g3960.t1 | ProSitePatterns | PS00916 | Phosphatidylinositol 3- and 4-kinases signature 2. | 1327 | 1347 | - |
| 44 | g3960.t1 | ProSiteProfiles | PS51546 | Phosphatidylinositol 3-kinase Ras-binding (PI3K RBD) domain profile. | 464 | 553 | 18.589 |
| 39 | g3960.t1 | ProSiteProfiles | PS51547 | Phosphatidylinositol 3-kinase C2 (PI3K C2) domain profile. | 742 | 914 | 37.344 |
| 42 | g3960.t1 | ProSiteProfiles | PS51545 | PIK helical domain profile. | 933 | 1109 | 21.725 |
| 40 | g3960.t1 | ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 1225 | 1488 | 62.517 |
| 43 | g3960.t1 | ProSiteProfiles | PS50195 | PX domain profile. | 1512 | 1628 | 12.187 |
| 41 | g3960.t1 | ProSiteProfiles | PS50004 | C2 domain profile. | 1663 | 1752 | 12.425 |
| 30 | g3960.t1 | SMART | SM00144 | pi3k_ras_2 | 429 | 556 | 0.0027 |
| 29 | g3960.t1 | SMART | SM00142 | pi3k_hr3_6 | 734 | 844 | 2.8E-12 |
| 28 | g3960.t1 | SMART | SM00145 | pi3k_hr2_4 | 933 | 1119 | 3.7E-39 |
| 31 | g3960.t1 | SMART | SM00146 | pi3k_hr1_6 | 1226 | 1487 | 1.9E-119 |
| 32 | g3960.t1 | SMART | SM00312 | PX_2 | 1512 | 1624 | 3.7E-13 |
| 27 | g3960.t1 | SMART | SM00239 | C2_3c | 1663 | 1767 | 6.2E-15 |
| 10 | g3960.t1 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 482 | 556 | 1.24E-8 |
| 13 | g3960.t1 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 736 | 916 | 1.01E-23 |
| 9 | g3960.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 938 | 1095 | 1.5E-42 |
| 11 | g3960.t1 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1138 | 1481 | 3.37E-86 |
| 14 | g3960.t1 | SUPERFAMILY | SSF64268 | PX domain | 1511 | 1631 | 1.83E-22 |
| 12 | g3960.t1 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1647 | 1771 | 8.93E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016301 | kinase activity | MF |
| GO:0048015 | phosphatidylinositol-mediated signaling | BP |
| GO:0046854 | phosphatidylinositol phosphate biosynthetic process | BP |
| GO:0035091 | phosphatidylinositol binding | MF |
KEGG
Orthology
- This transcript has been annotated with K00923 (phosphatidylinositol-4-phosphate 3-kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
