General information for g3982.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative PH and SEC7 domain-containing protein.
Parent gene
- The parent gene g3982 is located on chr_3: 29373805..29377789 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g3982 | g3982.t2 | isoform | g3982.t2 | 29372984 | 29375100 |
| chr_3 | g3982 | g3982.t2 | exon | g3982.t2.exon1 | 29372984 | 29373050 |
| chr_3 | g3982 | g3982.t2 | exon | g3982.t2.exon2 | 29373137 | 29373190 |
| chr_3 | g3982 | g3982.t2 | exon | g3982.t2.exon3 | 29373257 | 29373805 |
| chr_3 | g3982 | g3982.t2 | exon | g3982.t2.exon4 | 29373914 | 29375100 |
| chr_3 | g3982 | g3982.t2 | cds | g3982.t2.CDS1 | 29374189 | 29375100 |
| chr_3 | g3982 | g3982.t2 | TTS | g3982.t2 | 29375094 | 29375094 |
| chr_3 | g3982 | g3982.t2 | TSS | g3982.t2 | NA | NA |
Sequences
>g3982.t2 Gene=g3982 Length=1857
ATTGAAGCTGGTGATGTGATTTTAAAGGTTAATGGAACAGACGTTCATCGTTTTTCAACT
AAAGAAGTATTGAAATGCCTTCGGCTCTCAGACGATCCTGTTACATTAGAGTTAAAACGA
GATCCAAATATAAAAGATCATGTAAGAAAATATTTAGCGTCAAACTCGAGTCATCAAGAT
ATAGGAATTTCATCGCCTTCATCACCAATTATTAATAACATTTCATCACAATATGGTCGT
GGACATAGAATAAGTTCATCTGATTCATCAGCAACATGTCGAAAGTCTCGTATTCCAGTC
AATAACACACGTATACCTTCATTAAGTGCACCACAATCTCCTCAAGCAATAAAGCCTCGT
TACTTATCACATATACCAGTCTCAAATGGTCAAACATCATCACCAACAACTGTTGCTCCG
AAAAAACAAAATCCTCGATTTGAGGCATACATGATGACTGGAGATTTAATTTTAAATTTA
TCTAGAACATCTCAGAGCTCTAATTTGATTGCACCAGCACAAGTTAAAAAATCGACAATG
GATAGTTTAAGAGATTCGCCAATGAGAAGTCTTAAAAGAAAGAATGGAATTGCACCAAAG
GCAATATATGATTCATCTCCTTCAGAATCATCTTCGGCTAGTGTAAGTGAATTAGGTTCA
TATGAAATTTAAGAGCAATTGATAACAATTGAAGAATCTAATAATCCATCATCGTGTGGA
GATGAACGGAAACTACAATACAATTTAAGTAAAGGCTGTGCAAATAATATTTCATCTTCT
TCTTCGACATCTTCGCCAACAAACACAAATTCATCCAATTCATCAACGAATAATAATAGT
TATGATGGTGGTGGTGATGATAGATGCAGTAATAAGAACAATCAAGGACTCAATTCATTG
CAGCATAAAAAAAGCAAAATTTATACAGTTTTGCACAATGAAGAAATGCACCAAGATAAT
CTACAACAACATCATCAGCAAAAACAAGATAACAATTTAAATATTCGTAAAGAGATGACA
CCAAGTGCTTCAATGTCCTCGACTACTACTTCTTCAGCATCAACGACAATAAATCGTAGT
GAGACACTTTTAACCCCTAATTTAGATGTCTCTCGTTCAGTGCCCACATCACCGACTTCA
ATTTCAACTCCTTTATTGGATGCAAATAAAAGACGAGAAAATGTTTGTTCCGTTCCTACA
AGTCCAGAATGTATACAACAAATGCAAGAAAGTACTTCAATGAGACATAATAGTAATAAT
GTTCAGAATCATCAAAATGGAGTTTCATTGAGAAAATGTGATGCAAGTGGTTTTCGCACA
AGTCGATCTGAAGACCAACTTCAGCATTCTCAATGTGAAGGATTAATGGGGAATGCAATA
CCAATTGACATTGATGAAGACATTAATAGTTCATTAAATACACTCTTGGATACAAGACAT
GATTCTGAAGATTCTCAAAATTCTAATCGTGATAGAATAGTTTGGACCTATAATGCACCT
GTTATGCAAAACTCAATAAATAACCAAACACAAGGTGTTATTTCACCAACCTCAAGCTCA
ATTAGCACTTCGCCACAACACACTGATAGTCCTGCTTCGCCAACGTCTGTTTCTAGCTCA
GTTATGTCCTCATCAGGTTCTAAAGGAAATGGCATAAATAATACAAATGGCAGTGCAGGA
CAAAATATTATGTTTTTAAGTGGTGAACAGAGTGTCTCGGAAGCAATTTCAAATATTTCA
AGTCCTGACTATCAGGACGAGCATGATTTATTAAGCTCACGTGACTTATCAGCAGCAATG
GCAATTAGTGATCCAAGTGATTCTGATTCAACGCTCATTGTTGATCAAGCAAAGAAA
>g3982.t2 Gene=g3982 Length=304
MHQDNLQQHHQQKQDNNLNIRKEMTPSASMSSTTTSSASTTINRSETLLTPNLDVSRSVP
TSPTSISTPLLDANKRRENVCSVPTSPECIQQMQESTSMRHNSNNVQNHQNGVSLRKCDA
SGFRTSRSEDQLQHSQCEGLMGNAIPIDIDEDINSSLNTLLDTRHDSEDSQNSNRDRIVW
TYNAPVMQNSINNQTQGVISPTSSSISTSPQHTDSPASPTSVSSSVMSSSGSKGNGINNT
NGSAGQNIMFLSGEQSVSEAISNISSPDYQDEHDLLSSRDLSAAMAISDPSDSDSTLIVD
QAKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g3982.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 64 | - |
| 1 | g3982.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 233 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed