Gene loci information

Transcript annotation

  • This transcript has been annotated as 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g3991 g3991.t4 TTS g3991.t4 29399663 29399663
chr_3 g3991 g3991.t4 isoform g3991.t4 29399724 29400732
chr_3 g3991 g3991.t4 exon g3991.t4.exon1 29399724 29400332
chr_3 g3991 g3991.t4 cds g3991.t4.CDS1 29399724 29400332
chr_3 g3991 g3991.t4 exon g3991.t4.exon2 29400387 29400490
chr_3 g3991 g3991.t4 cds g3991.t4.CDS2 29400387 29400490
chr_3 g3991 g3991.t4 exon g3991.t4.exon3 29400576 29400732
chr_3 g3991 g3991.t4 cds g3991.t4.CDS3 29400576 29400732
chr_3 g3991 g3991.t4 TSS g3991.t4 29400752 29400752

Sequences

>g3991.t4 Gene=g3991 Length=870
ATGTTTCGTAAATTAAATTTATTTAAAATTTATCGTACGTTTAATAAAAGACAATTATCA
TTGTCTATAAGATGCTGTAATAATTTTACTGAAGAATCTAAGGATTTTACTCATTTTGGT
TTTGAAACTGTCAAAACTGATGAAAAGACAGAAAAGGATGTTGCTGAAAAGTATGATTTA
ATGAATGATGCAATGTCAATGGGTATTCATCGATTATGGAAAGATATATTTCTAGAAAGA
CTCTATCCAACATTAGGAACTAAATTATTAGATGTTGCTGGTGGAACAGGAGATATTGCG
TTCAGATATATTAACTATATCAACAATTTAAATAAATCAAATCAAGATGCATATAGTAAA
AAGAGCTCGGTTACAATTCTTGACATTAATCAGCATATGCTTAATGTAGGAATGGAAAGA
GCTGAAAAACTTGGTCACATATCAAATGAGACGCTTGATGTTGAATGGGTGTGTGGAAAT
GCAGAAGAGTTGCCACTTGAAAGTGATCAATTTACAGCATATACAATTGCATTCGGAATT
AGAAATGTAACACATATAGACAAAGCATTAAGAGAAGCCTATAGAGTTCTTAAACCTGGT
GGTCGTTTTATGTGTCTCGAATTTAGTCATATTGAAAATAATGAAACACTTCAATGGCTC
TATGATCAATATTCTTTTCAAGTTATACCACCGATGGGACAAATTTTAGCGAATCAATGG
CAACCCTATCAATACTTGGTTGAAAGTATTAGAAAGTTCCCGAAAAAGTTAGAATTCAAA
TCAATGATAGAAGAAGCTGGTTTTAAGCAAGTTACATATGAAAATTTAACTCTTGGAATA
TGTGCTATTCACTCCGGTTTCAAATTATAG

>g3991.t4 Gene=g3991 Length=289
MFRKLNLFKIYRTFNKRQLSLSIRCCNNFTEESKDFTHFGFETVKTDEKTEKDVAEKYDL
MNDAMSMGIHRLWKDIFLERLYPTLGTKLLDVAGGTGDIAFRYINYINNLNKSNQDAYSK
KSSVTILDINQHMLNVGMERAEKLGHISNETLDVEWVCGNAEELPLESDQFTAYTIAFGI
RNVTHIDKALREAYRVLKPGGRFMCLEFSHIENNETLQWLYDQYSFQVIPPMGQILANQW
QPYQYLVESIRKFPKKLEFKSMIEEAGFKQVTYENLTLGICAIHSGFKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g3991.t4 CDD cd02440 AdoMet_MTases 88 205 2.23304E-12
6 g3991.t4 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 53 289 1.1E-76
4 g3991.t4 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 44 288 35.187912
2 g3991.t4 PANTHER PTHR43591 METHYLTRANSFERASE 8 288 3.2E-73
3 g3991.t4 PANTHER PTHR43591:SF61 2-METHOXY-6-POLYPRENYL-1,4-BENZOQUINOL METHYLASE, MITOCHONDRIAL 8 288 3.2E-73
1 g3991.t4 Pfam PF01209 ubiE/COQ5 methyltransferase family 52 288 1.0E-82
8 g3991.t4 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 58 73 -
9 g3991.t4 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 195 209 -
11 g3991.t4 ProSiteProfiles PS51608 UbiE family SAM-binding methyltransferase profile. 41 288 87.258
5 g3991.t4 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 46 275 4.11E-36
10 g3991.t4 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 52 288 2.2E-76

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008168 methyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed