Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g4080 | g4080.t6 | TSS | g4080.t6 | 30485080 | 30485080 |
chr_3 | g4080 | g4080.t6 | isoform | g4080.t6 | 30485305 | 30487933 |
chr_3 | g4080 | g4080.t6 | exon | g4080.t6.exon1 | 30485305 | 30485546 |
chr_3 | g4080 | g4080.t6 | cds | g4080.t6.CDS1 | 30485383 | 30485546 |
chr_3 | g4080 | g4080.t6 | exon | g4080.t6.exon2 | 30485612 | 30485700 |
chr_3 | g4080 | g4080.t6 | cds | g4080.t6.CDS2 | 30485612 | 30485700 |
chr_3 | g4080 | g4080.t6 | exon | g4080.t6.exon3 | 30485873 | 30486522 |
chr_3 | g4080 | g4080.t6 | cds | g4080.t6.CDS3 | 30485873 | 30486522 |
chr_3 | g4080 | g4080.t6 | exon | g4080.t6.exon4 | 30486695 | 30486792 |
chr_3 | g4080 | g4080.t6 | cds | g4080.t6.CDS4 | 30486695 | 30486712 |
chr_3 | g4080 | g4080.t6 | exon | g4080.t6.exon5 | 30486886 | 30487166 |
chr_3 | g4080 | g4080.t6 | exon | g4080.t6.exon6 | 30487634 | 30487812 |
chr_3 | g4080 | g4080.t6 | exon | g4080.t6.exon7 | 30487884 | 30487933 |
chr_3 | g4080 | g4080.t6 | TTS | g4080.t6 | 30488059 | 30488059 |
>g4080.t6 Gene=g4080 Length=1589
GATAATCGATATGATGTTGGTGGTGGTGAGCAATTTTCGACTTTGAGCGAGCTTATCGAA
CACTATAAAAAGAATCCGATGGTCGAAACTTCCGGAACTGTCGTGAATCTTCGTCATCCA
TTCAATGCAACAAGAATAACAGCAGCCAGTATTGATTCCCGTGTTGAAATCCTTCAACGC
GAACATGGACCGAACTCTTGTTTTGGAAAAGGTGGTTTTTGGGAAGAATTTGAGTCATTA
CAACAACAAGAATGTCGACATTCATTTTCACGAAATGAAGGACAGCGTTTGGAAAATCGA
AGCAAAAATCGTTACAAAAACATTTTACCTTTTGATCATACGAGAGTAATTTTACGAGAT
GTTGACAACACAGTGCCCGGTGCAGAATATATAAATGCAAATTACATTCGTCCCCTCGAT
ATCGAGTCACTCGATCTAACATCGATGGCTTCATTTGAAAACTTGAGCGGATCATATGCG
ACATTAACAAATAACTCTAATGGAAAATGTGTCAATTGTCAGTTATTGAACAAAATGTGC
GTTCAATGTGCCATTGATGGAAGTTCGAGCAACAAGCACAAACGAACTGAGTCATTATCA
TCAATTCGCACCAATTTCAGCACGTTAACGAGTGCGACAACAAATGCTTCGAGAAAGGGA
GGCTGTGGTGATGAATTTATTAGCAAGACATATATTGCAACGCAAGGATGTCTACCAAAT
ACAATTGTTGATTTCTGGAACATGATTTGGCAAGAAAATACGCGTGTGATTGTCATGACA
ACAAAGGAGATTGAGCGAACGAAGAAAAAGTGCGAAAAATATTGGCCTGATAGTGGACAA
ACACAAGAGTGGGGTCATGCAAAAGTGAAATGCTTAAGTGAAACTTCTACAAATGATTAT
ACACTGCGAGAACTTTTATTTTCATGGAAAGGACAAGAAGGACGAAAAGTTTATCATTAT
CATTATTTTTTGTGGCCTGATTATGTTTCCTTTAGGTGACTGATTCCGGAAGTGTTCTCA
ACTTCCTGCAAGATGTTAATGTACGGCAAGAACAATTAATGAGTGATGGCGTTAATCCTG
GTCCAATTTGTGTGCATTGCTCAGCTGGAATTGGACGTACAGGCACATTTATTGTGATAG
ACATGATTCTTGACCAAATCGATCGTGAGGGACTCGATTGTGAAATAGATATTCATCGTA
CGATCTTGATGGTTCGTTCTCAACGTTCTGGAATGGTACAGACTGAAGCTCAATACAAGT
TTGTGTATTATGCGGTGCAACATTACATTCAAACAAAACTTCAGAGAAAGCGTGCTGAAC
AACAGTCATTACAACACGGGCGAGAATATACGAATATAAAGTATGATGATGTGCGTAGTC
CGCTGCCTCAATCGATTAGCCAAATGAGTTTGTACAATAACAACAACAACACGAGTAGCA
ACAACTCATATCAGCAGTCCTCGGGTATTATTGAACCATTGCCATTTCATCATCGTCAAG
TTCCCGTTCCGCCATCATTTTCTGATTTTAGTTCGTCTGCTTATGAAAATTTGGATTCAA
TACCATCAAGACCGCCAAGAAAATCTTGA
>g4080.t6 Gene=g4080 Length=306
MVETSGTVVNLRHPFNATRITAASIDSRVEILQREHGPNSCFGKGGFWEEFESLQQQECR
HSFSRNEGQRLENRSKNRYKNILPFDHTRVILRDVDNTVPGAEYINANYIRPLDIESLDL
TSMASFENLSGSYATLTNNSNGKCVNCQLLNKMCVQCAIDGSSSNKHKRTESLSSIRTNF
STLTSATTNASRKGGCGDEFISKTYIATQGCLPNTIVDFWNMIWQENTRVIVMTTKEIER
TKKKCEKYWPDSGQTQEWGHAKVKCLSETSTNDYTLRELLFSWKGQEGRKVYHYHYFLWP
DYVSFR
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
2 | g4080.t6 | PANTHER | PTHR46257:SF3 | TYROSINE-PROTEIN PHOSPHATASE CORKSCREW | 1 | 302 | 0.000 |
3 | g4080.t6 | PANTHER | PTHR46257 | TYROSINE-PROTEIN PHOSPHATASE CORKSCREW | 1 | 302 | 0.000 |
6 | g4080.t6 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 103 | 110 | 0.000 |
5 | g4080.t6 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 205 | 225 | 0.000 |
4 | g4080.t6 | PRINTS | PR00700 | Protein tyrosine phosphatase signature | 289 | 306 | 0.000 |
1 | g4080.t6 | Pfam | PF00102 | Protein-tyrosine phosphatase | 73 | 301 | 0.000 |
9 | g4080.t6 | ProSiteProfiles | PS50055 | PTP type protein phosphatase family profile. | 47 | 306 | 29.978 |
8 | g4080.t6 | SMART | SM00194 | PTPc_3 | 46 | 304 | 0.000 |
7 | g4080.t6 | SUPERFAMILY | SSF52799 | (Phosphotyrosine protein) phosphatases II | 44 | 302 | 0.000 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0006470 | protein dephosphorylation | BP |
GO:0004725 | protein tyrosine phosphatase activity | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.