Gene loci information

Transcript annotation

  • This transcript has been annotated as Adiponectin receptor protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4085 g4085.t2 isoform g4085.t2 30505937 30509086
chr_3 g4085 g4085.t2 exon g4085.t2.exon1 30505937 30506615
chr_3 g4085 g4085.t2 exon g4085.t2.exon2 30506697 30506766
chr_3 g4085 g4085.t2 cds g4085.t2.CDS1 30506727 30506766
chr_3 g4085 g4085.t2 exon g4085.t2.exon3 30507190 30507372
chr_3 g4085 g4085.t2 cds g4085.t2.CDS2 30507190 30507372
chr_3 g4085 g4085.t2 exon g4085.t2.exon4 30507463 30507657
chr_3 g4085 g4085.t2 cds g4085.t2.CDS3 30507463 30507657
chr_3 g4085 g4085.t2 exon g4085.t2.exon5 30507731 30507987
chr_3 g4085 g4085.t2 cds g4085.t2.CDS4 30507731 30507987
chr_3 g4085 g4085.t2 exon g4085.t2.exon6 30508859 30509086
chr_3 g4085 g4085.t2 cds g4085.t2.CDS5 30508859 30509086
chr_3 g4085 g4085.t2 TSS g4085.t2 NA NA
chr_3 g4085 g4085.t2 TTS g4085.t2 NA NA

Sequences

>g4085.t2 Gene=g4085 Length=1612
ATGTTTGCAAAAAAGAACCGTCCATCACTTTCATCATCATTGGACGTGCAATCAAATATA
GAAGATGAGGATTTTATTTTGAGAAAACGAATAAGAGATAATTCGCCAATTGATGATCGA
TTAGATGGCGATTCTGAAAGTTTAAATCTTGCAAGTGATGAGGAGGAAGACATTCCTGGT
TGTCCTTTGCCTTCGACACCAGAAGATAATGAGCTTTTGGAAGCTGAGATGACAGAAGTT
TTAAAGGCAGGCGTACTCTCCGACGAAATTGATTTGGGAGCTCTTGCACATAATGCAGCA
GAACAAGCTGAAGTTTTTGTTAGAAAAGTATGGGAGGCTTCTTGGAAAGTTGTTCACTTT
AAGAATTTGCCGAAATGGTTGCAAGACAACGATTATCTTCATAGAGGTCATAGACCGCCT
CTCGCATCATTTGGAGCTTGCTTCAAATCGATCTTTAGACTACATACCGAAACTGGAAAC
ATTTGGACACACTTGCTTGGTTGTATAATGTTTATCGGCGCAACAATTTATTTTTTGTTG
AGACCAGCATGGCAGATTAATTTGGAAGAAAAAATGATTTTCTTGAGCTTTTTCATTGGT
GCAATAGTTTGCCTTGGATTCTCATTCGCTTTTCACACTGTATCATGTCACTCAGAAATG
ATTGGAAAACTTTTTAGCAAATTAGATTATTGTGGAATTGCTCTCTTAATTATGGGGAGT
TTTGTACCTTGGCTTTATTACGGATTTTATTGCCATTATCAACCAAAAATCATTTATTTG
ACGATTGTCATTGTCTTAGGATTCTTCTCAATTGTTACTTCTTTGTGGGACAAATTTTCT
ACGCCGCAATTGAGACCAGTGAGGGTCAATCTCATCAAATTTTTCATGTACTGGTTATTG
TAGCTGCTTTAGTTCATTATCATGGAATATCAGAAATGGCTATGCATCGAGTATCGCTCG
GGGAATGTGATATTAAGCACACTGCAATTGTCTTATAAAGAATTAATAAAGTAGTGGGTT
TTTAAGCGAACTATGATGACGATGAGCAACAATGACAAAAGCTAGAAAGAAGCTAAATAA
TAAATTCAATGTACTTTTTTTGGGAGAGTATAATTATATGATTATAGTAAAAAACTAATT
TCCTTATTAGCAAACACTATGCTGCACTCAAAAAAGAAAAGCATTCAGACATGTATATGA
ATTAATATTACCACATAGCCTACATATAAATATATTTTTCATAGCACACCTATGATCTTC
TTAAAAGACTTTCCAACTTGTTTAAAAATTCGGTGGAATTGGTAGCAAGTAAAATCAAAT
TTAATGTACATTGCCCATAAAGTTTTGTATTCTTTTGTGTTATATTACTTAGTTTTAAAA
TTTATGTAAATAGCAATTGGAAAAAAAGTAAATTATTAAAACATGGGAAATCAATCAATA
TCTTTAGTTGTGTGAAAAACTTTATTAAATTCTAAAACAGATATCTATATCTTAAATGAA
AAATGATCAATGCAAAAAAAAACTGTAAAAATAATTAAAATTCAATGAAAATTTTAAAAT
AAAATTTATTCTAAAGTATATAAAAGGCAACAATTTAATTTCTTTTATTGTT

>g4085.t2 Gene=g4085 Length=300
MFAKKNRPSLSSSLDVQSNIEDEDFILRKRIRDNSPIDDRLDGDSESLNLASDEEEDIPG
CPLPSTPEDNELLEAEMTEVLKAGVLSDEIDLGALAHNAAEQAEVFVRKVWEASWKVVHF
KNLPKWLQDNDYLHRGHRPPLASFGACFKSIFRLHTETGNIWTHLLGCIMFIGATIYFLL
RPAWQINLEEKMIFLSFFIGAIVCLGFSFAFHTVSCHSEMIGKLFSKLDYCGIALLIMGS
FVPWLYYGFYCHYQPKIIYLTIVIVLGFFSIVTSLWDKFSTPQLRPVRVNLIKFFMYWLL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g4085.t2 PANTHER PTHR20855:SF28 PROGESTIN AND ADIPOQ RECEPTOR FAMILY 104 290 5.1E-88
3 g4085.t2 PANTHER PTHR20855 ADIPOR/PROGESTIN RECEPTOR-RELATED 104 290 5.1E-88
1 g4085.t2 Pfam PF03006 Haemolysin-III related 152 292 2.6E-41
11 g4085.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 160 -
16 g4085.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 161 180 -
9 g4085.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 181 191 -
15 g4085.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 192 212 -
12 g4085.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 213 231 -
14 g4085.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 232 250 -
8 g4085.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 251 256 -
13 g4085.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 257 276 -
10 g4085.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 277 300 -
7 g4085.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 158 180 -
5 g4085.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 193 215 -
6 g4085.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 230 250 -
4 g4085.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 257 276 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values