Gene loci information

Transcript annotation

  • This transcript has been annotated as Adiponectin receptor protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4085 g4085.t6 isoform g4085.t6 30505984 30507361
chr_3 g4085 g4085.t6 exon g4085.t6.exon1 30505984 30506615
chr_3 g4085 g4085.t6 cds g4085.t6.CDS1 30506551 30506615
chr_3 g4085 g4085.t6 exon g4085.t6.exon2 30506697 30506766
chr_3 g4085 g4085.t6 cds g4085.t6.CDS2 30506697 30506766
chr_3 g4085 g4085.t6 exon g4085.t6.exon3 30506845 30507043
chr_3 g4085 g4085.t6 cds g4085.t6.CDS3 30506845 30507043
chr_3 g4085 g4085.t6 exon g4085.t6.exon4 30507190 30507361
chr_3 g4085 g4085.t6 cds g4085.t6.CDS4 30507190 30507341
chr_3 g4085 g4085.t6 TSS g4085.t6 NA NA
chr_3 g4085 g4085.t6 TTS g4085.t6 NA NA

Sequences

>g4085.t6 Gene=g4085 Length=1073
GTGGAATTGCTCTCTTAATTATGGGGAGTTTTGTACCTTGGCTTTATTACGGATTTTATT
GCCATTATCAACCAAAAATCATTTATTTGACGATTGTCATTGTCTTAGGATTCTTCTCAA
TTGTTACTTCTTTGTGGGACAAATTTTCTACGCCGCAATTGAGACCAGTGAGAGCGAGCG
TTTTCATGGCTTTTGGCTTATCGGGAGTAATACCTGCAATACACTATGTGTATATGGAAG
GATGGTTCAATGAAATAAGCCGAAGTTCACTGGGATGGCTCGTTTTGATGGGACTGCTTT
ATATCCTTGGTGCACTTTTTTATGCTTTGAGAATACCCGAACGCTGGTTCCCTGGCAAAT
TCGATCTTTGGGGTCAATCTCATCAAATTTTTCATGTACTGGTTATTGTAGCTGCTTTAG
TTCATTATCATGGAATATCAGAAATGGCTATGCATCGAGTATCGCTCGGGGAATGTGATA
TTAAGCACACTGCAATTGTCTTATAAAGAATTAATAAAGTAGTGGGTTTTTAAGCGAACT
ATGATGACGATGAGCAACAATGACAAAAGCTAGAAAGAAGCTAAATAATAAATTCAATGT
ACTTTTTTTGGGAGAGTATAATTATATGATTATAGTAAAAAACTAATTTCCTTATTAGCA
AACACTATGCTGCACTCAAAAAAGAAAAGCATTCAGACATGTATATGAATTAATATTACC
ACATAGCCTACATATAAATATATTTTTCATAGCACACCTATGATCTTCTTAAAAGACTTT
CCAACTTGTTTAAAAATTCGGTGGAATTGGTAGCAAGTAAAATCAAATTTAATGTACATT
GCCCATAAAGTTTTGTATTCTTTTGTGTTATATTACTTAGTTTTAAAATTTATGTAAATA
GCAATTGGAAAAAAAGTAAATTATTAAAACATGGGAAATCAATCAATATCTTTAGTTGTG
TGAAAAACTTTATTAAATTCTAAAACAGATATCTATATCTTAAATGAAAAATGATCAATG
CAAAAAAAAACTGTAAAAATAATTAAAATTCAATGAAAATTTTAAAATAAAAT

>g4085.t6 Gene=g4085 Length=161
MGSFVPWLYYGFYCHYQPKIIYLTIVIVLGFFSIVTSLWDKFSTPQLRPVRASVFMAFGL
SGVIPAIHYVYMEGWFNEISRSSLGWLVLMGLLYILGALFYALRIPERWFPGKFDLWGQS
HQIFHVLVIVAALVHYHGISEMAMHRVSLGECDIKHTAIVL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g4085.t6 PANTHER PTHR20855:SF28 PROGESTIN AND ADIPOQ RECEPTOR FAMILY 2 155 2.6E-59
3 g4085.t6 PANTHER PTHR20855 ADIPOR/PROGESTIN RECEPTOR-RELATED 2 155 2.6E-59
1 g4085.t6 Pfam PF03006 Haemolysin-III related 1 136 1.9E-45
12 g4085.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 19 -
14 g4085.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 40 -
8 g4085.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 41 51 -
15 g4085.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 52 71 -
10 g4085.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 72 82 -
13 g4085.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 83 103 -
9 g4085.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 104 122 -
16 g4085.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 123 139 -
11 g4085.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 140 161 -
6 g4085.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 39 -
4 g4085.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 54 76 -
7 g4085.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 83 105 -
5 g4085.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 120 139 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values