General information for g4120.t44
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aldehyde dehydrogenase X, mitochondrial.
Parent gene
- The parent gene g4120 is located on chr_3: 30730080..30735128 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4120 | g4120.t44 | TTS | g4120.t44 | 30727694 | 30727694 |
| chr_3 | g4120 | g4120.t44 | isoform | g4120.t44 | 30728278 | 30735128 |
| chr_3 | g4120 | g4120.t44 | exon | g4120.t44.exon1 | 30728278 | 30728445 |
| chr_3 | g4120 | g4120.t44 | exon | g4120.t44.exon2 | 30728508 | 30728731 |
| chr_3 | g4120 | g4120.t44 | cds | g4120.t44.CDS1 | 30728581 | 30728731 |
| chr_3 | g4120 | g4120.t44 | exon | g4120.t44.exon3 | 30728797 | 30729002 |
| chr_3 | g4120 | g4120.t44 | cds | g4120.t44.CDS2 | 30728797 | 30729002 |
| chr_3 | g4120 | g4120.t44 | exon | g4120.t44.exon4 | 30729866 | 30730057 |
| chr_3 | g4120 | g4120.t44 | cds | g4120.t44.CDS3 | 30729866 | 30730057 |
| chr_3 | g4120 | g4120.t44 | exon | g4120.t44.exon5 | 30732970 | 30733117 |
| chr_3 | g4120 | g4120.t44 | cds | g4120.t44.CDS4 | 30732970 | 30733117 |
| chr_3 | g4120 | g4120.t44 | exon | g4120.t44.exon6 | 30733183 | 30733387 |
| chr_3 | g4120 | g4120.t44 | cds | g4120.t44.CDS5 | 30733183 | 30733217 |
| chr_3 | g4120 | g4120.t44 | exon | g4120.t44.exon7 | 30735057 | 30735128 |
| chr_3 | g4120 | g4120.t44 | TSS | g4120.t44 | 30735128 | 30735128 |
Sequences
>g4120.t44 Gene=g4120 Length=1215
AGTTTTATTTTATATTTTGTGAGGAAAGATAAAAATATTGAAAGAATAAAGTGAAACATT
ATATTTTGTGAACTTTTTATCAACAACGAATTTGTTGAATCAGTTACCAAAAAACTTTTG
TGACATCAAATCAGCAGAATGGTAAGAAACTTGCAGATGTTGCTGAGGGCGAATAAGATG
ATGTAATTTTGGCCGTTGAAGCTGCGAAGAAAGCATTTAAAAGAAGCTCAGAATGGAGAA
ATATGGATCAATCAGCTCGTGCAAGATTGATGCACAAACTCGCTGACTTGATTGATCGCG
ATTCGGACATTATTGCAAACGTTGAGTCTTTGGATAATGGAAACCTTTTAAAATGGCGAA
ACTCGATGTTTTTTTTTGTTCAATGTTGCTTCGTTATTATGCTGGTTATGCAGACAAATT
TCACGATCAGTTTCAATTTTATTTTTCAGAAAATACATTATATAGCACGAGAATATATCA
TTGTGTCTCAGTTTCAATTTTGTGCTTCACTAAGCAGCTTCAAATACTTGAAAACGTATA
GTGAAATAATTTTTTTGTGTGTAACTAAAGCAATCAAAATAATGGCCAATCTAAATCAAG
AAATTAAGTATACAAAGCTTTTTATCAACAACGAATTTGTTGAATCAGTTACCAAAAAAA
CTTTTGTGACATCAAATCCAGCAAATGGTAAGAAACTTGCAGATGTTGCTGAGGGCGATA
AAGATGATGTAAATTTGGCCGTTGAAGCTGCGAAGAAAGCATTTAAAAGAAGCTCAGAAT
GGAGAAATATGGATCAATCAGCTCGTGCAAGATTGATGCACAAACTCGCTGACTTGATTG
ATCGCGATTCGGACATTATTGCAAACGTTGAGTCTTTGGATAATGGAAAACCTTTTAAAA
TGGCGAAACTCGATGTTTATTTTGTTCAATGTTGTTCGTTATTATGCTGGTTATGCAGAC
AAAATTCACGGTAGAACAGTTCCAAGTGATGGCAATCTCTTCAGTTATGTTCGAAAAGAA
CCAATTGGTGTATGCGGTCAAATTATTCCGTGGAACTATCCAGCATTGATGGTTGTCTTC
AAGTTGGCACCTATTTTAGCAACCGGCTGCGTTTCAATTTTGAAACCAGCAGAACAAACT
CCACTTTCTGCACTTTATATTGCATCATTAGTCAAAGAAGCAGGAATACCTGCTGGCGTA
GTTAACGTAATTACT
>g4120.t44 Gene=g4120 Length=243
MDQSARARLMHKLADLIDRDSDIIANVESLDNGNLLKWRNSMFFFVQCCFVIMLVMQTNF
TISFNFIFQKIHYIAREYIIVSQFQFCASLSSFKYLKTYSEIIFLCVTKAIKIMANLNQE
IKYTKLFINNEFVESVTKKTFVTSNPANGKKLADVAEGDKDDVNLAVEAAKKAFKRSSEW
RNMDQSARARLMHKLADLIDRDSDIIANVESLDNGKPFKMAKLDVYFVQCCSLLCWLCRQ
NSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g4120.t44 | Gene3D | G3DSA:3.40.605.10 | Aldehyde Dehydrogenase; Chain A | 107 | 242 | 1.1E-34 |
| 3 | g4120.t44 | PANTHER | PTHR11699:SF274 | DEHYDROGENASE, PUTATIVE-RELATED | 1 | 37 | 9.4E-52 |
| 5 | g4120.t44 | PANTHER | PTHR11699 | ALDEHYDE DEHYDROGENASE-RELATED | 1 | 37 | 9.4E-52 |
| 2 | g4120.t44 | PANTHER | PTHR11699:SF274 | DEHYDROGENASE, PUTATIVE-RELATED | 115 | 225 | 9.4E-52 |
| 4 | g4120.t44 | PANTHER | PTHR11699 | ALDEHYDE DEHYDROGENASE-RELATED | 115 | 225 | 9.4E-52 |
| 1 | g4120.t44 | Pfam | PF00171 | Aldehyde dehydrogenase family | 133 | 229 | 5.9E-20 |
| 10 | g4120.t44 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 41 | - |
| 11 | g4120.t44 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 42 | 68 | - |
| 9 | g4120.t44 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 69 | 243 | - |
| 7 | g4120.t44 | SUPERFAMILY | SSF53720 | ALDH-like | 114 | 227 | 2.23E-26 |
| 6 | g4120.t44 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 42 | 64 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
