General information for g4136.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4136 is located on chr_3: 30891773..30893551 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4136 | g4136.t3 | TSS | g4136.t3 | 30885485 | 30885485 |
| chr_3 | g4136 | g4136.t3 | isoform | g4136.t3 | 30886047 | 30891003 |
| chr_3 | g4136 | g4136.t3 | exon | g4136.t3.exon1 | 30886047 | 30886871 |
| chr_3 | g4136 | g4136.t3 | exon | g4136.t3.exon2 | 30886933 | 30887168 |
| chr_3 | g4136 | g4136.t3 | exon | g4136.t3.exon3 | 30887234 | 30887305 |
| chr_3 | g4136 | g4136.t3 | cds | g4136.t3.CDS1 | 30887242 | 30887305 |
| chr_3 | g4136 | g4136.t3 | exon | g4136.t3.exon4 | 30887371 | 30887426 |
| chr_3 | g4136 | g4136.t3 | cds | g4136.t3.CDS2 | 30887371 | 30887426 |
| chr_3 | g4136 | g4136.t3 | exon | g4136.t3.exon5 | 30887828 | 30887903 |
| chr_3 | g4136 | g4136.t3 | cds | g4136.t3.CDS3 | 30887828 | 30887903 |
| chr_3 | g4136 | g4136.t3 | exon | g4136.t3.exon6 | 30888873 | 30889143 |
| chr_3 | g4136 | g4136.t3 | cds | g4136.t3.CDS4 | 30888873 | 30888979 |
| chr_3 | g4136 | g4136.t3 | exon | g4136.t3.exon7 | 30890770 | 30891003 |
| chr_3 | g4136 | g4136.t3 | TTS | g4136.t3 | 30891836 | 30891836 |
Sequences
>g4136.t3 Gene=g4136 Length=1770
AAATGCACAAAACGTAATTTCTCTCTCGTTGAATGCAATGTGAAAAAATATATATCATAT
ACATATACATAGATTTCTTATTTGATCGTACACGTATTATTTTAAATATATCATATATAT
GTTTTAAAGAAAAACGAGGAAATTTACTCAAGAATATGTAAAAGAAGGGAAAGTTAAGAG
AATTAAAGAGGTAATTAATAAGAAATTGAGATATTTTTTTCAATTATTAGGAATTTATGC
TTCTCTTCTTACGAATTTATGTGCTCCTAAAGTCTGTTAATTGAGATGCGCTAGGGTTAA
AGTCATGCATTGTATGATGTGCATAAACGATTCCAGATGACATTGCAGGCAATTCTCTAG
GATATGGTGGTGATGAAGTTGCTGCATGAATGCTTGTGATCGAATCTTTTTGTATAACAT
TTAGATGATGAAAAGGTGCTTTGGTTAGCTTATTGTCTTCAAATGAGAGCTGTGAGCTGT
TTGTTGCTGCCACTACCGGAGATGTTAGTGAGAGACTTTTATTTCTCTCATTATTGTGCA
AAAGATATTTAAAGAATTCATATGTTGACCAACACACAGCAGTTGCTGGCATTTGATATA
GCACACGAGCTTGTAATCCTTTGAAAAATCCTGACATTCCCGCAACACGATAAACTTTAC
GTATGGCGTCAAAAAGTCCCTTTGTTGTCCCAACTCCCTGTTCTTGTGTATTCAAGAGAG
TTTTGCATACATCTAAGGGCGTCGTAAAAGCAGCTGCTGCTGCACCTGCTGCACCACCAG
CGACCACATGAGCCAATGGTGAGTATTTCTTCTCTTTATTCAACTAATTTCTTGAAAGAA
TTCATACGTTGAGAAGTGAATAGCTTGATAAGGCAGATTCATCACAAGTTGAGTTGTATA
TGAGCGATAAAAAGCACCGAAACCTTCTTGCTTAAAAACTTTTCGTGCACAATCCGTTAC
AGATTTGTATGGTGAATCATACATCTGTAGTCGCTGTTTTATGACTTCTGTTGGATTTGA
AATTGCATCGTGTATGAGAGTAGCTGACGTCGCACTTATTAGATAATTTATGTTATCATT
AATTTTTAATTTAGCCAAACTTGACTTTGTGAATTCGTATGAACTGAAATATAATGCATG
GGCTGGTCCAGCTCCGAGTACGACTGCTGATGCTCCTCTTAAAGGTCTAAATACCTTCTT
GCCGAATCATATCTCTCAACACACCACCAATTGTGTTACTTGCATGCGACAAACTCTGCA
TTCTCCTTTTATTGTATCGACAGGATACATCACGATATGCTCCATTATTCCTGCACAAGC
ACCCGCAAATAATGTGATTGATAATTTTGTAGTCTCAGGCAAACTTTCATAATCGTCGAA
ATTCATATTAACAACTTTTTTGCGATTCACTGCACGCCGATCTTTATTCACTTCTGTGCG
AGACACGTTAGATTATTTAATAAAGGTCTTGTTATTTCGAGTTATCGTCGTTGAACGTTT
TAATTATGAAATACGTCTTCCTTCATTTTTTTATATTTTCAAATCCAATTCTCTACTTCA
GCTGTCTTGATTCATCGATCGCAATGAGACCAATTTTTAGACGTTTTCAATCAGTTGTTA
TTACATCAGGTACGTTAAGTCCTATGGATATGTATCCAAAAATTCTCGATTTTGATCCAG
TTGTTATGAGTTCATTTACTATGACTTTATCTCGACCATGTTTGCTACCAATGGTTGTTA
CTCGTGGAAATGATCAAGTTGCAATAAGTT
>g4136.t3 Gene=g4136 Length=100
MLSLIFNLAKLDFVNSYELKYNAWAGPAPSTTADAPLKGLNTFLPNHISQHTTNCVTCMR
QTLHSPFIVSTGYITICSIIPAQAPANNVIDNFVVSGKLS
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
