Gene loci information

Transcript annotation

  • This transcript has been annotated as Exocyst complex component 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g4138 g4138.t1 TSS g4138.t1 30896830 30896830
chr_3 g4138 g4138.t1 isoform g4138.t1 30896899 30899833
chr_3 g4138 g4138.t1 exon g4138.t1.exon1 30896899 30896947
chr_3 g4138 g4138.t1 cds g4138.t1.CDS1 30896899 30896947
chr_3 g4138 g4138.t1 exon g4138.t1.exon2 30897007 30897684
chr_3 g4138 g4138.t1 cds g4138.t1.CDS2 30897007 30897684
chr_3 g4138 g4138.t1 exon g4138.t1.exon3 30897747 30899637
chr_3 g4138 g4138.t1 cds g4138.t1.CDS3 30897747 30899637
chr_3 g4138 g4138.t1 exon g4138.t1.exon4 30899755 30899833
chr_3 g4138 g4138.t1 cds g4138.t1.CDS4 30899755 30899833
chr_3 g4138 g4138.t1 TTS g4138.t1 30900010 30900010

Sequences

>g4138.t1 Gene=g4138 Length=2697
ATGGCTCCTTTGCCTCTTGTAACTGGCATATCGCCTAAAGAAGGACCTCCTGGAACAAAA
ATTATCATTCGTGGAGAAAATTTAGGTACAAGAGCGAACGATTTGATAGCCGTAGAAGTT
TGTGGCGGAGAATGTTCATTTGAATGGCAATCAAAGAATAAGATTATTGCTCGAACGGGC
ATTAATGGACAAAAAGGAAAAGGAGATGTAATTGTGACTACTTTGAGCGGAGGAATTGGT
TCTTCAACAGTTCAATTTAGAACTTATACAGAAACAATCGGTCCACTTAAAGAATCTGCA
GTTTGGGTAGAAGAATCTCCAGTGCAATCACTTGCTTGGGGTCGGAGAACAATGGCTACT
TCAGGCTACCATACTGTTGACGATCCACTTGGTTTAAGTATGGAAGGAAATGATAAAAAA
TTTCCTGATGATTTACGAGAAATGTTTCCTGAAAATTCAGGAGATTTATCAAGAGAAAAC
TTTTCACCTTGCTGGTTTCTACTTGAAAATCATCATGGTACATCATTTGAAGATTTACGA
GCTGGTTATGCATATTTAAAAAGAAAAGTTGAAGGACAAAAGGAAGGTCAATTGAGCTTT
CTGAAAACTCATGTCGGTGCAGTCATTGATCAGTTAGATACAATGATGAATTTAAAGAAG
AAAATGGACAATGATGGTGATGTGGATATAGCAAAACGTGTTCATAATCTTCAAGATACT
ATATCAAAATCAATTGATTCATCACACGCTCTTTTTGATGATGTACTCAAACGTAGAGAA
AAAGCAGATAATTCACGTGCAGCACTTTCCGTTCTAAATCGTTATAAATTTCTCTTTTGT
TTACCAACAAATATAGAAAAAAATGCTTCAAAAAATGAATTCGACATCATAGTAAATGAT
TATGCAAGAGCTAAAAATCTTTATGGCAAATCAGAAATTCCATTAATTCAAAAAGTGTTA
GCTGAAGCAGATGAGATTATATTAGAAGTGAGAAAAGAATTGCATAAGAAAATTCAAGAA
ATGCCTCAAGGTGTTGAACAACAAAAAAGATTTGTAAAATCTCTTATCAATCTTGAAATA
CAACAAATAGGAACGAAGCAAGCAGAAATGCTCAAAATAACAGATCCTGCTTGGGATGCA
ATTGCAAGTAGAGCAAAATATATTGAAGCAACATTTAAAAGAACATATGAAGAATTTCAA
GAAAAAGAAAAAGAAAATCTTCAAAAGGATACGACAAAACGTGATCCACCTATTCGTGTG
CTTTTTTGTGAAGAAATAACGGAAATTGCAAGTGGACAATTTCCAGATCTATGGCGTTTA
GGACAATCCTATTTTACTGGAGAATTAAGAGGAGTTAATGAACCAAAACCAGGCAATTTC
AAACAGATAATTTTAAATGCAATTGAAAGATTTTGTAGCTATGTTCGTGCTGCAATTTTA
CCACAAAATCAAAAATATTCGACCGTTACTGCATGGTCTTTCTCATCATCATCACAATTA
AATTTATTTAGTACATGGTTGCCAACATGCTTACGTCATTTAAGAATTTCATATGCCTCA
TTAATTCGCTTAGATTTACCAAATGAAGCACTCGATATTGTATTAAAGTTGATTGATGAA
CTTCGTCTTTTCTGTCTTACAACTATACTTAAAAAAGCAATTGACAAAGTAAAAAAATTA
CACGAAAAAGAATCATGGGAATTATCAGTAATAGAATTTCCGGGTGCGACTTCGCTTCCT
GCTAAATTAGAGGAACTTTTAACTGAAGCTCTCGATGAAGGTCAACAAATGTGTTTACAA
TTAGAGGTTCGAGAAAATCCTCTTTTTGATGTTCCAAATTCTGAAGGTCATCGCGAAATT
TCTAAAATAATTGAGACAATTTTAGAATGCTTCAGCACTGTGCTTGAAGAGTTGGCTACA
GAAAGATCTGATGATGAAATTCAACAGCTACCTAAGCAAATTATATCTGGTTTTCCAACA
AACAGCTTGCTGCCACATTCAATAAATTTAAATGAAGCAAAATCTACAATCAGTTCAACT
ATCACAATAACATGGGAACATCGCCTTCTCTGTTGTCTTGCAAATGCTGCTTATTGCAAT
AAAATTTTTATCAATAATAATTTAAGCAATTTATTTGTGAAATATGGTTATCCTGTTCCA
AAATTGGCGCTTGAAAATTCTCGCTCTAACGTGAACATGGTGTTTGGAAATTTATTGGAA
ATGTATGTTGAACACAAAGCAGATCCTCTAGTTTCAACAATAGAGCCGAGTATGTACATT
GTATCACATTTTAAATGGGACGGTGTGGAAAAATTCGATAATCTAAGTCCCTACGCGCAC
GAGTGTCTTGATAATGTTGTTGCTGTCTATTCAGAAATTTTTGCAATTTCACCATTTTTG
TTGCGTCCAATTTTGGAACAAATAATTCAAACTATTGCTGAAGAGTTGGCTCGTTTGATG
GTGAGTGTAGATGATTTCAATGTTAATGGAAAAAAACAAGCAACACTCGATATAAAAATG
ATTCGTGATGTACTAAGACTATATAGTAATGAACGCGCTAAGCAATCATTTAATGAAGCT
TTAGATGCAATTCCCAAATTAACTGCTGACGAGAACAAAAATGTTGAAACTTTACTTGTA
AGTATAAAACAGCGAATGAAAATTCAACTTATGTGTCTAACTGTAGTCAATCCTTAA

>g4138.t1 Gene=g4138 Length=898
MAPLPLVTGISPKEGPPGTKIIIRGENLGTRANDLIAVEVCGGECSFEWQSKNKIIARTG
INGQKGKGDVIVTTLSGGIGSSTVQFRTYTETIGPLKESAVWVEESPVQSLAWGRRTMAT
SGYHTVDDPLGLSMEGNDKKFPDDLREMFPENSGDLSRENFSPCWFLLENHHGTSFEDLR
AGYAYLKRKVEGQKEGQLSFLKTHVGAVIDQLDTMMNLKKKMDNDGDVDIAKRVHNLQDT
ISKSIDSSHALFDDVLKRREKADNSRAALSVLNRYKFLFCLPTNIEKNASKNEFDIIVND
YARAKNLYGKSEIPLIQKVLAEADEIILEVRKELHKKIQEMPQGVEQQKRFVKSLINLEI
QQIGTKQAEMLKITDPAWDAIASRAKYIEATFKRTYEEFQEKEKENLQKDTTKRDPPIRV
LFCEEITEIASGQFPDLWRLGQSYFTGELRGVNEPKPGNFKQIILNAIERFCSYVRAAIL
PQNQKYSTVTAWSFSSSSQLNLFSTWLPTCLRHLRISYASLIRLDLPNEALDIVLKLIDE
LRLFCLTTILKKAIDKVKKLHEKESWELSVIEFPGATSLPAKLEELLTEALDEGQQMCLQ
LEVRENPLFDVPNSEGHREISKIIETILECFSTVLEELATERSDDEIQQLPKQIISGFPT
NSLLPHSINLNEAKSTISSTITITWEHRLLCCLANAAYCNKIFINNNLSNLFVKYGYPVP
KLALENSRSNVNMVFGNLLEMYVEHKADPLVSTIEPSMYIVSHFKWDGVEKFDNLSPYAH
ECLDNVVAVYSEIFAISPFLLRPILEQIIQTIAEELARLMVSVDDFNVNGKKQATLDIKM
IRDVLRLYSNERAKQSFNEALDAIPKLTADENKNVETLLVSIKQRMKIQLMCLTVVNP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g4138.t1 CDD cd00603 IPT_PCSR 5 90 0e+00
6 g4138.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 2 92 0e+00
3 g4138.t1 PANTHER PTHR13043 EXOCYST COMPLEX COMPONENT SEC5 64 894 0e+00
4 g4138.t1 PANTHER PTHR13043:SF1 EXOCYST COMPLEX COMPONENT 2 64 894 0e+00
2 g4138.t1 Pfam PF01833 IPT/TIG domain 5 86 1e-07
1 g4138.t1 Pfam PF15469 Exocyst complex component Sec5 195 384 0e+00
5 g4138.t1 SUPERFAMILY SSF81296 E set domains 3 87 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000145 exocyst CC
GO:0006893 Golgi to plasma membrane transport BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values