General information for g4138.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 2.
Parent gene
- The parent gene g4138 is located on chr_3: 30899833..30902172 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4138 | g4138.t2 | TSS | g4138.t2 | 30896830 | 30896830 |
| chr_3 | g4138 | g4138.t2 | isoform | g4138.t2 | 30896899 | 30898225 |
| chr_3 | g4138 | g4138.t2 | exon | g4138.t2.exon1 | 30896899 | 30896947 |
| chr_3 | g4138 | g4138.t2 | cds | g4138.t2.CDS1 | 30896899 | 30896947 |
| chr_3 | g4138 | g4138.t2 | exon | g4138.t2.exon2 | 30897007 | 30897684 |
| chr_3 | g4138 | g4138.t2 | cds | g4138.t2.CDS2 | 30897007 | 30897684 |
| chr_3 | g4138 | g4138.t2 | exon | g4138.t2.exon3 | 30897747 | 30898225 |
| chr_3 | g4138 | g4138.t2 | cds | g4138.t2.CDS3 | 30897747 | 30898225 |
| chr_3 | g4138 | g4138.t2 | TTS | g4138.t2 | 30898220 | 30898220 |
Sequences
>g4138.t2 Gene=g4138 Length=1206
ATGGCTCCTTTGCCTCTTGTAACTGGCATATCGCCTAAAGAAGGACCTCCTGGAACAAAA
ATTATCATTCGTGGAGAAAATTTAGGTACAAGAGCGAACGATTTGATAGCCGTAGAAGTT
TGTGGCGGAGAATGTTCATTTGAATGGCAATCAAAGAATAAGATTATTGCTCGAACGGGC
ATTAATGGACAAAAAGGAAAAGGAGATGTAATTGTGACTACTTTGAGCGGAGGAATTGGT
TCTTCAACAGTTCAATTTAGAACTTATACAGAAACAATCGGTCCACTTAAAGAATCTGCA
GTTTGGGTAGAAGAATCTCCAGTGCAATCACTTGCTTGGGGTCGGAGAACAATGGCTACT
TCAGGCTACCATACTGTTGACGATCCACTTGGTTTAAGTATGGAAGGAAATGATAAAAAA
TTTCCTGATGATTTACGAGAAATGTTTCCTGAAAATTCAGGAGATTTATCAAGAGAAAAC
TTTTCACCTTGCTGGTTTCTACTTGAAAATCATCATGGTACATCATTTGAAGATTTACGA
GCTGGTTATGCATATTTAAAAAGAAAAGTTGAAGGACAAAAGGAAGGTCAATTGAGCTTT
CTGAAAACTCATGTCGGTGCAGTCATTGATCAGTTAGATACAATGATGAATTTAAAGAAG
AAAATGGACAATGATGGTGATGTGGATATAGCAAAACGTGTTCATAATCTTCAAGATACT
ATATCAAAATCAATTGATTCATCACACGCTCTTTTTGATGATGTACTCAAACGTAGAGAA
AAAGCAGATAATTCACGTGCAGCACTTTCCGTTCTAAATCGTTATAAATTTCTCTTTTGT
TTACCAACAAATATAGAAAAAAATGCTTCAAAAAATGAATTCGACATCATAGTAAATGAT
TATGCAAGAGCTAAAAATCTTTATGGCAAATCAGAAATTCCATTAATTCAAAAAGTGTTA
GCTGAAGCAGATGAGATTATATTAGAAGTGAGAAAAGAATTGCATAAGAAAATTCAAGAA
ATGCCTCAAGGTGTTGAACAACAAAAAAGATTTGTAAAATCTCTTATCAATCTTGAAATA
CAACAAATAGGAACGAAGCAAGCAGAAATGCTCAAAATAACAGATCCTGCTTGGGATGCA
ATTGCAAGTAGAGCAAAATATATTGAAGCAACATTTAAAAGAACATATGAAGAATTTCAA
GAAAAA
>g4138.t2 Gene=g4138 Length=402
MAPLPLVTGISPKEGPPGTKIIIRGENLGTRANDLIAVEVCGGECSFEWQSKNKIIARTG
INGQKGKGDVIVTTLSGGIGSSTVQFRTYTETIGPLKESAVWVEESPVQSLAWGRRTMAT
SGYHTVDDPLGLSMEGNDKKFPDDLREMFPENSGDLSRENFSPCWFLLENHHGTSFEDLR
AGYAYLKRKVEGQKEGQLSFLKTHVGAVIDQLDTMMNLKKKMDNDGDVDIAKRVHNLQDT
ISKSIDSSHALFDDVLKRREKADNSRAALSVLNRYKFLFCLPTNIEKNASKNEFDIIVND
YARAKNLYGKSEIPLIQKVLAEADEIILEVRKELHKKIQEMPQGVEQQKRFVKSLINLEI
QQIGTKQAEMLKITDPAWDAIASRAKYIEATFKRTYEEFQEK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g4138.t2 | CDD | cd00603 | IPT_PCSR | 5 | 90 | 0 |
| 6 | g4138.t2 | Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 2 | 92 | 0 |
| 3 | g4138.t2 | PANTHER | PTHR13043 | EXOCYST COMPLEX COMPONENT SEC5 | 64 | 401 | 0 |
| 4 | g4138.t2 | PANTHER | PTHR13043:SF1 | EXOCYST COMPLEX COMPONENT 2 | 64 | 401 | 0 |
| 2 | g4138.t2 | Pfam | PF01833 | IPT/TIG domain | 5 | 86 | 0 |
| 1 | g4138.t2 | Pfam | PF15469 | Exocyst complex component Sec5 | 195 | 384 | 0 |
| 5 | g4138.t2 | SUPERFAMILY | SSF81296 | E set domains | 3 | 87 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0006893 | Golgi to plasma membrane transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
