General information for g4138.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 2.
Parent gene
- The parent gene g4138 is located on chr_3: 30899833..30902172 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g4138 | g4138.t4 | TSS | g4138.t4 | 30898684 | 30898684 |
| chr_3 | g4138 | g4138.t4 | isoform | g4138.t4 | 30898693 | 30899833 |
| chr_3 | g4138 | g4138.t4 | exon | g4138.t4.exon1 | 30898693 | 30899637 |
| chr_3 | g4138 | g4138.t4 | cds | g4138.t4.CDS1 | 30898808 | 30899637 |
| chr_3 | g4138 | g4138.t4 | exon | g4138.t4.exon2 | 30899755 | 30899833 |
| chr_3 | g4138 | g4138.t4 | cds | g4138.t4.CDS2 | 30899755 | 30899833 |
| chr_3 | g4138 | g4138.t4 | TTS | g4138.t4 | 30900010 | 30900010 |
Sequences
>g4138.t4 Gene=g4138 Length=1024
AAAATTACACGAAAAAGAATCATGGGAATTATCAGTAATAGAATTTCCGGGTGCGACTTC
GCTTCCTGCTAAATTAGAGGAACTTTTAACTGAAGCTCTCGATGAAGGTCAACAAATGTG
TTTACAATTAGAGGTTCGAGAAAATCCTCTTTTTGATGTTCCAAATTCTGAAGGTCATCG
CGAAATTTCTAAAATAATTGAGACAATTTTAGAATGCTTCAGCACTGTGCTTGAAGAGTT
GGCTACAGAAAGATCTGATGATGAAATTCAACAGCTACCTAAGCAAATTATATCTGGTTT
TCCAACAAACAGCTTGCTGCCACATTCAATAAATTTAAATGAAGCAAAATCTACAATCAG
TTCAACTATCACAATAACATGGGAACATCGCCTTCTCTGTTGTCTTGCAAATGCTGCTTA
TTGCAATAAAATTTTTATCAATAATAATTTAAGCAATTTATTTGTGAAATATGGTTATCC
TGTTCCAAAATTGGCGCTTGAAAATTCTCGCTCTAACGTGAACATGGTGTTTGGAAATTT
ATTGGAAATGTATGTTGAACACAAAGCAGATCCTCTAGTTTCAACAATAGAGCCGAGTAT
GTACATTGTATCACATTTTAAATGGGACGGTGTGGAAAAATTCGATAATCTAAGTCCCTA
CGCGCACGAGTGTCTTGATAATGTTGTTGCTGTCTATTCAGAAATTTTTGCAATTTCACC
ATTTTTGTTGCGTCCAATTTTGGAACAAATAATTCAAACTATTGCTGAAGAGTTGGCTCG
TTTGATGGTGAGTGTAGATGATTTCAATGTTAATGGAAAAAAACAAGCAACACTCGATAT
AAAAATGATTCGTGATGTACTAAGACTATATAGTAATGAACGCGCTAAGCAATCATTTAA
TGAAGCTTTAGATGCAATTCCCAAATTAACTGCTGACGAGAACAAAAATGTTGAAACTTT
ACTTGTAAGTATAAAACAGCGAATGAAAATTCAACTTATGTGTCTAACTGTAGTCAATCC
TTAA
>g4138.t4 Gene=g4138 Length=302
MCLQLEVRENPLFDVPNSEGHREISKIIETILECFSTVLEELATERSDDEIQQLPKQIIS
GFPTNSLLPHSINLNEAKSTISSTITITWEHRLLCCLANAAYCNKIFINNNLSNLFVKYG
YPVPKLALENSRSNVNMVFGNLLEMYVEHKADPLVSTIEPSMYIVSHFKWDGVEKFDNLS
PYAHECLDNVVAVYSEIFAISPFLLRPILEQIIQTIAEELARLMVSVDDFNVNGKKQATL
DIKMIRDVLRLYSNERAKQSFNEALDAIPKLTADENKNVETLLVSIKQRMKIQLMCLTVV
NP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g4138.t4 | PANTHER | PTHR13043 | EXOCYST COMPLEX COMPONENT SEC5 | 6 | 298 | 0 |
| g4138.t4 | PANTHER | PTHR13043:SF1 | EXOCYST COMPLEX COMPONENT 2 | 6 | 298 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0006893 | Golgi to plasma membrane transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
