General information for g4192.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 313a1.
Parent gene
- The parent gene g4192 is located on chr_2: 7326..8486 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4192 | g4192.t1 | isoform | g4192.t1 | 7326 | 8486 |
| chr_2 | g4192 | g4192.t1 | exon | g4192.t1.exon1 | 7326 | 8175 |
| chr_2 | g4192 | g4192.t1 | cds | g4192.t1.CDS1 | 7326 | 8175 |
| chr_2 | g4192 | g4192.t1 | exon | g4192.t1.exon2 | 8314 | 8486 |
| chr_2 | g4192 | g4192.t1 | cds | g4192.t1.CDS2 | 8314 | 8486 |
| chr_2 | g4192 | g4192.t1 | TSS | g4192.t1 | NA | NA |
| chr_2 | g4192 | g4192.t1 | TTS | g4192.t1 | NA | NA |
Sequences
>g4192.t1 Gene=g4192 Length=1023
ATGAAATGCTTGATGAAAAATTTAAGTGAAATGGAAGGAAAAGGAGAATTTAATGTTTTT
CACATCATGTTTGCATTATCACTTGATAATATTCTTTCTATAATGAATTTAGAAGCAAAT
ATTCAAGATTTAAATAATAAAGATAGACTGATCCATATTAAAAATATGAAAATTTGGGCT
CAAACAAAAATAATCAGAAGTCTTTTTTGGTGGCTATATCCTGACATAATCTTTAATTAT
ACAAAATTAGGAAAAAATCAAATAAAAGCCATGTCAGAAATTAATAAAAATTTTATTTCA
AAAATTATTGATCAAAACTATTTGGTTGAAAATTATGAAAAACCTAAAACATTTGTGCAA
GCATTAATTGACCCAAAGAATAAATTGACAAAAAATGAAATTTCTGACGAAATTTTTTGT
TTAATGATTGCAGCTCAAGATTCATCAGCAGTTACAGGATCAACTGTTCTTCTTATGTTG
GCAATGCATAGGAATATTCAAGAAAAGGTTGTTGATGAGCTTAAGGAAATAATTGGAAAA
TCAAAAGACTTTTATTTGGATATTGAACAATTGAATGAACTCAAATATCTTGAGATGGTC
ATTTGTGAAGTTCTAAGACTTTTCCCAGTTGCTCCATTTAATATTAGAAGTAATGACAAT
GAAATTATTTCTACAGAAGGATATATCATTCCAGTAAATTCAAATCTTTTTATAAATTTC
TTTGATGTCCATCACGACACATCAATTTGGGGATACGATGCTGATAAATTTAAACCAGAA
AGATTCGAGCAAGAAAGTTTTAGAAAAATTCATCCATATGCTTTTGTGCCATTCTCTAAA
GGCAAAAGAATGTGTCTCGGCTATCGATATGCGATTCTCTTTATAAAAATGCAAATTGCA
AATGTTCTTTTAAAATATGAAATTAATACAAGCTTGAAGTATGAAAATATAAATTACAAA
ATTGGTATCACACTAGTTATTCAACAGGGCTATAAAATAAGTTTAAAAAAGAGGAAAAAA
TAA
>g4192.t1 Gene=g4192 Length=340
MKCLMKNLSEMEGKGEFNVFHIMFALSLDNILSIMNLEANIQDLNNKDRLIHIKNMKIWA
QTKIIRSLFWWLYPDIIFNYTKLGKNQIKAMSEINKNFISKIIDQNYLVENYEKPKTFVQ
ALIDPKNKLTKNEISDEIFCLMIAAQDSSAVTGSTVLLMLAMHRNIQEKVVDELKEIIGK
SKDFYLDIEQLNELKYLEMVICEVLRLFPVAPFNIRSNDNEIISTEGYIIPVNSNLFINF
FDVHHDTSIWGYDADKFKPERFEQESFRKIHPYAFVPFSKGKRMCLGYRYAILFIKMQIA
NVLLKYEINTSLKYENINYKIGITLVIQQGYKISLKKRKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g4192.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 1 | 340 | 1.3E-69 |
| 2 | g4192.t1 | PANTHER | PTHR24291:SF140 | CYTOCHROME P450 4C3-RELATED | 5 | 338 | 7.7E-66 |
| 3 | g4192.t1 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 5 | 338 | 7.7E-66 |
| 11 | g4192.t1 | PRINTS | PR00385 | P450 superfamily signature | 144 | 161 | 1.2E-6 |
| 5 | g4192.t1 | PRINTS | PR00463 | E-class P450 group I signature | 153 | 179 | 1.1E-12 |
| 7 | g4192.t1 | PRINTS | PR00463 | E-class P450 group I signature | 198 | 216 | 1.1E-12 |
| 8 | g4192.t1 | PRINTS | PR00385 | P450 superfamily signature | 199 | 210 | 1.2E-6 |
| 6 | g4192.t1 | PRINTS | PR00463 | E-class P450 group I signature | 275 | 285 | 1.1E-12 |
| 9 | g4192.t1 | PRINTS | PR00385 | P450 superfamily signature | 276 | 285 | 1.2E-6 |
| 4 | g4192.t1 | PRINTS | PR00463 | E-class P450 group I signature | 285 | 308 | 1.1E-12 |
| 10 | g4192.t1 | PRINTS | PR00385 | P450 superfamily signature | 285 | 296 | 1.2E-6 |
| 1 | g4192.t1 | Pfam | PF00067 | Cytochrome P450 | 1 | 311 | 3.8E-54 |
| 13 | g4192.t1 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 278 | 287 | - |
| 12 | g4192.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 2 | 338 | 1.57E-69 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed