Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ABC transporter G family member 23.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4202 g4202.t1 isoform g4202.t1 57107 57622
chr_2 g4202 g4202.t1 exon g4202.t1.exon1 57107 57622
chr_2 g4202 g4202.t1 cds g4202.t1.CDS1 57107 57622
chr_2 g4202 g4202.t1 TSS g4202.t1 NA NA
chr_2 g4202 g4202.t1 TTS g4202.t1 NA NA

Sequences

>g4202.t1 Gene=g4202 Length=516
ATGCATAAAATTTACAGCGGAATAATTAAAATTTTCAATAGAAAAATTAAGTTAAAAAAT
ACATCAGAACTTGCAAATTCAATAGGTTTTATGCCACAACAAATTTCACTAGTTCCTGAA
CTTACAATTAAAGAAACTTTTGAATATTTTGCAAATTTGCATTCGATGAAGCAAAAAGAA
TTTAAAAGACAAATGTTGATGATTTCAGACTTGTTGCAATTGTTATCATTGAATGAATTT
ATTGGAAATTTATCAGGTGGTGAACAGAGACGAGTTTCTCTTGCAGTCACAATTATTCAT
AATCCAAAACTTCTCATTTTGGATGAACCAACTGTTGGACTTGATTTTGAACTTCGTGAT
AAAATTTGGAATTATTTTCGCGAACAAACTAAAAGTAATGATCTAACAGTTTTAATATCA
ACTCATTGCATGAATGAAATTGCAAAATGTCATCGTTGTGGTTTTATGAAAAATGGAAAA
TTAATTATTGAAGAAGAACCAAAAAATATATTATAA

>g4202.t1 Gene=g4202 Length=171
MHKIYSGIIKIFNRKIKLKNTSELANSIGFMPQQISLVPELTIKETFEYFANLHSMKQKE
FKRQMLMISDLLQLLSLNEFIGNLSGGEQRRVSLAVTIIHNPKLLILDEPTVGLDFELRD
KIWNYFREQTKSNDLTVLISTHCMNEIAKCHRCGFMKNGKLIIEEEPKNIL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g4202.t1 Gene3D G3DSA:3.40.50.300 - 1 171 0
2 g4202.t1 PANTHER PTHR43038 ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 3 171 0
1 g4202.t1 Pfam PF00005 ABC transporter 5 111 0
3 g4202.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2 170 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed