General information for g4203.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4203 is located on chr_2: 57746..59321 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4203 | g4203.t1 | isoform | g4203.t1 | 57746 | 59321 |
| chr_2 | g4203 | g4203.t1 | exon | g4203.t1.exon1 | 57746 | 57819 |
| chr_2 | g4203 | g4203.t1 | cds | g4203.t1.CDS1 | 57746 | 57819 |
| chr_2 | g4203 | g4203.t1 | exon | g4203.t1.exon2 | 57878 | 57993 |
| chr_2 | g4203 | g4203.t1 | cds | g4203.t1.CDS2 | 57878 | 57993 |
| chr_2 | g4203 | g4203.t1 | exon | g4203.t1.exon3 | 58339 | 58414 |
| chr_2 | g4203 | g4203.t1 | cds | g4203.t1.CDS3 | 58339 | 58414 |
| chr_2 | g4203 | g4203.t1 | exon | g4203.t1.exon4 | 58475 | 58837 |
| chr_2 | g4203 | g4203.t1 | cds | g4203.t1.CDS4 | 58475 | 58837 |
| chr_2 | g4203 | g4203.t1 | exon | g4203.t1.exon5 | 59111 | 59321 |
| chr_2 | g4203 | g4203.t1 | cds | g4203.t1.CDS5 | 59111 | 59321 |
| chr_2 | g4203 | g4203.t1 | TSS | g4203.t1 | NA | NA |
| chr_2 | g4203 | g4203.t1 | TTS | g4203.t1 | NA | NA |
Sequences
>g4203.t1 Gene=g4203 Length=840
ATGTTCAAAATTAAATGGGATGTAATCAAAGGTTTACTTATTAAAGATTTTCATCGTATT
AAAAGATCTTATATTGAATTTATATTACTTCTTCTGTCAACATTATATTTGTCTTTACAA
TTTTCAATAACTTTTGGCCAATATCCAAATGATTTAACGATTGGAGTTGTTAATTATGAA
ATTTCTAACTTTGAAGAATTTCTTTTCATACAATCAGCATCAATCTTCGATTTTACTAAA
TCTGCTACACCAAATGGAATTATTTTGTTATCTGCAATAACTATGATATCATCATCAGTT
GTTTCAATCGTGCAGTGTCGTTCTGATGGTGTTTGGAATCGAAGTTTATTGAATGGAGTC
AAAATTTCTGAAATTGTAATAACTTATTTGATTCAATATAGCTGTTATGCTTTTATTACA
TCAATTGAATCAATTTTATGTTTAAAATTTGTTTTTAAAATTGAAATCATTGGAAATATT
TGGCTTGCATTTATTTTATTATTTATTTATGCCATGAATTCATTCTTATTTGGTTTTAAT
GTGTCAATAATTCTTGATGACGTCACAATAGCTGGTTTTACAGGAATTGGATTGTTAGTA
ATTTTTACTAATTTATCAGGCATTGTTTGGCCAATTCAAGGATTTTCAAAATTTATTCAG
CCATTTCAATACCTTTTTCCTATCCCTTTTGCCTGTGTTGCTTTTCATGGAGTTATTTTT
AAAGGTTATGGAATTTTTCATAAAACAGTTTTTGATGTACTTTTAGTTTTAATTAGTAAC
AGCATTTTATTATTAATTCTTTTATGTTTTATTTTAAAATTTAAAAGTTTTGTTCATTGA
>g4203.t1 Gene=g4203 Length=279
MFKIKWDVIKGLLIKDFHRIKRSYIEFILLLLSTLYLSLQFSITFGQYPNDLTIGVVNYE
ISNFEEFLFIQSASIFDFTKSATPNGIILLSAITMISSSVVSIVQCRSDGVWNRSLLNGV
KISEIVITYLIQYSCYAFITSIESILCLKFVFKIEIIGNIWLAFILLFIYAMNSFLFGFN
VSIILDDVTIAGFTGIGLLVIFTNLSGIVWPIQGFSKFIQPFQYLFPIPFACVAFHGVIF
KGYGIFHKTVFDVLLVLISNSILLLILLCFILKFKSFVH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4203.t1 | PANTHER | PTHR43038 | ATP-BINDING CASSETTE, SUB-FAMILY H, MEMBER 1 | 78 | 275 | 1.3E-26 |
| 3 | g4203.t1 | PANTHER | PTHR43038:SF2 | RH61964P | 78 | 275 | 1.3E-26 |
| 1 | g4203.t1 | Pfam | PF01061 | ABC-2 type transporter | 9 | 238 | 3.3E-14 |
| 14 | g4203.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 23 | - |
| 21 | g4203.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 24 | 43 | - |
| 17 | g4203.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 44 | 125 | - |
| 19 | g4203.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 126 | 148 | - |
| 12 | g4203.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 149 | 159 | - |
| 23 | g4203.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 160 | 184 | - |
| 16 | g4203.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 185 | 189 | - |
| 18 | g4203.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 190 | 212 | - |
| 11 | g4203.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 213 | 223 | - |
| 20 | g4203.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 244 | - |
| 15 | g4203.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 245 | 249 | - |
| 22 | g4203.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 250 | 272 | - |
| 13 | g4203.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 273 | 279 | - |
| 7 | g4203.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 24 | 46 | - |
| 5 | g4203.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 82 | 104 | - |
| 4 | g4203.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 125 | 147 | - |
| 6 | g4203.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 179 | - |
| 10 | g4203.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 192 | 214 | - |
| 9 | g4203.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 224 | 246 | - |
| 8 | g4203.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 253 | 272 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed