Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4339 g4339.t1 TTS g4339.t1 1401422 1401422
chr_2 g4339 g4339.t1 isoform g4339.t1 1402064 1409811
chr_2 g4339 g4339.t1 exon g4339.t1.exon1 1402064 1402171
chr_2 g4339 g4339.t1 cds g4339.t1.CDS1 1402064 1402171
chr_2 g4339 g4339.t1 exon g4339.t1.exon2 1402229 1402372
chr_2 g4339 g4339.t1 cds g4339.t1.CDS2 1402229 1402372
chr_2 g4339 g4339.t1 exon g4339.t1.exon3 1402433 1402528
chr_2 g4339 g4339.t1 cds g4339.t1.CDS3 1402433 1402528
chr_2 g4339 g4339.t1 exon g4339.t1.exon4 1402591 1404666
chr_2 g4339 g4339.t1 cds g4339.t1.CDS4 1402591 1404666
chr_2 g4339 g4339.t1 exon g4339.t1.exon5 1404727 1409811
chr_2 g4339 g4339.t1 cds g4339.t1.CDS5 1404727 1409811
chr_2 g4339 g4339.t1 TSS g4339.t1 NA NA

Sequences

>g4339.t1 Gene=g4339 Length=7509
ATGAACTCGTTAATTAATTGTGAATTTTCTTCTATTTTCAGTGAAATTTGTACAGCACTT
TTCGATAGTTTATACATTCGTTTAGTGTCAAACATTCCAAACTCTCAGCGAAAACGATTC
CAGAATCGAAAGAAATCACGACGCAAAAATCAAGAAATTTCAAATATGCCTGCTCGTTTC
GAAGATTTAGTAACTGACACAAGACGTAACGCGCCTTCATCCGTGAACATGGACCTAGAC
ATGAATGAAAGACGCTTTTCACATCAACGTGTCGTTCAAGATGATATTTGCATCACTGGC
TTCAGTGGGCGCTTGCCTGAGAGTTCAAATATTGATGAATTCAAACAAAATCTTTTTGAT
GGTGTCGATATGGTGAATGATGATCCACGTAGATGGGCTGCTGGTTTGCATGATTTACCA
ACTCGAACTGGTAAAATTAAGCATGATGATTTGCAAAATTTAGATGCAGCTTTTTTTAAG
CTTCATCAAAAGCAAGCTGAATGTATGGATCCTCAGTTAAGAATGTTACTCGAATGCACT
TATGAAGCCATCATTGATGCCGGTATTAATCCACAAGAAATTCGTGGCACTCGCACTGGT
GTTTATGTTGGTGTTTCAAACTCTGATAGTGAGGAATTTTGGTGTCGTGATCCGGATGTT
GTTAACGGATATGGACTTACTGGATGTGCACGTTCAATGTTTGCAAATCGCATTTCTTTT
ACCTTTGATTTTAAGGGACCAAGTTATGCTGTTGACACTGCTTGCTCATCATCTCTTTTT
GCAATGGATCATGCTTTTCGTGATATAAAGTCTGGTCGAACTGATGCAGCAATTGTCGCA
GGCGTTGGGTTAATTTTTAAACCAACTATGTCACTTCAATTTAAACGTCTTAATATGTTG
AGTCCAGACGGAATGTGCAAAGCTTTTGATGAGTCTGGAAATGGCTATGTCCGATCTGAT
GGATGTGTTGTAACATTTCTTCAAAAATCAAAAGATTCTCGTCGTATTTATGCTACTGTA
TTGAATGTACGCACAAATACTGATGGAGCAAAAGATCAAGGCATAACATTCCCAAATGGT
CAAATGCAAAATCGTTTAATTCGTGAAACTTATGAAGAAATTGGTCTTGATCCACGTGAA
GTTGTGTATGTTGAAGCTCATGGAACTGGAACAAAAGTTGGAGACCCCCAAGAAGTAAAT
TCTATTTGTGACTTTTTCTGCAAAGATCGAAAGACACCATTGCTGATTGGCAGTGTAAAA
TCTAATATGGGACATAGTGAGCCAGCATCAGGCGTTTGTTCAGTAGCAAAAATTCTTATT
GCTATGGAAGCTGGAATAATTCCTGGCAATTTGCATTATAAAAATCCTAATCCAGACCTT
TATGGCATAATGGATGGAAGAATGAAAGTTGTTGATAGAAATATGGAATGGAATGGAGGC
ATAATCGGTCTCAATAGTTTTGGATTCGGTGGAGCTAACGCCCACGTTATATTAAAATCA
AATCCTAAGCCAAAAGCAATTGGTTCAATTGGAGAAATTCCACGAGTTGTTGCTTGTTCA
GGTCGTACAGAAGAAGCTATTAATATGATGTTGAATGAAATTGAAGCAAATCGTAATGAT
GAAGAATTTTTGGGTTTAATAAATGAAATTCATTCAAAGAATATTCCTATGCATTACTAT
CGTGGCTATACTGTCATGGGAGCTGATGGAAGCAATCAACGTGAAATAGAAGAATGTCGT
GATGAAAAACGTCCAATTTGGTATATTTATTCTGGAATGGGAAGTCAATGGGCAAGTATG
GCAAAAGAAATTATGAAAGTTGATGCTTTTCGTCAGGCAATTAACAAATGTGCTGATGTT
TTAAAACCAGAAGGAGTCGATCTTATTGAAATTCTCACTAAATCTGATGAAGCTAAATTT
GACAATATTCTCAATTCATTTATATCAATTGCTGCTGTTCAAGTGGCATTGACTGATGTA
CTTACATCTCTTGGAATTTCACCTGATGGAATGGTTGGCCATTCTGTTGGAGAATTAGGA
TGTGCTTATGCAGATGGTTGTTTTACTGCTGAACAAACTGTTTTAGCTGCATATTGGAGA
GGTCGTTCAATTCTCGATACTGATTTAATTGCCGGTCAAATGGCCGCTGTTGGTTTAACT
TGGGAAGAATGTCAAAAACGTTTGCCTAAAGATGTGATTGCAGCATGTCATAATGGTGCT
GATAGCGTCACTATTTCTGGACCTGTTTCTTCTGTCGACAAAGTTGTTAAAGAATTATCA
GCTGAAGGAATTTTCGCAAAAGCTGTTAAATCAAGTGGAATTGCTTTTCATAGCAAGTAC
ATTGCTGAAGCAGCACCCAAATTGAGGAAATCATTGGATAAAATTATTCCAACGCCAAAA
ACTCGCTCTGAAAAATGGATTAGCTCTTCAATTCCAGAGTCATCATGGTCTTCACCACTT
GCAATGCATAGTTCATCTGCATATCATGTTAACAATCTTCTTTCGCCTGTTCTTTTTCAT
TCAGCTATTCAACATGTTCCAAGCAATGCAATTTGTATTGAAATCGCACCACATGGATTA
TTACAAGCAATTTTAAAACGTTCATTAAATGCTGAATGCACAAATATTAGTTTAATGAAG
AGACAACATACTGATAATGTTCAATTTTTGCTTTCAAATGTTGGCAAATTATATCTTGCA
GGAGCTCAACCACAACTTGCAAAATTATATAGACCAATCACTTATCCAGTTGGCCGTTCA
ACACCCATGTTAAATTCTAAAATTGGTTGGGATCATTCTCAAAAATGGATACTTTTGGAT
GTTTCAAAAGAAAGCTCAGGTGAAACACTTGTTGAAGTCAATCTTGGCAAAGAAAGTGAT
GCATATCTCTCTGGTCATGCTATTGATGGTCGAGTTTTATTCCCTGCAACTGGTTACATG
ACGCTCGCATGGAAAACATATGCAAAAATGAAGGGAACAACTTATGATCGTTTGCCAGTT
GTTCTTGAAAATGTCGTTTTTCATCGTGCAACAATTTTGCCAAAAGATGGCTCAGTTAAA
TTTGGCTTGAATTTCTTCGATGGAACTGGAAAGTTTGAAATTTGTGAAGGTGGTTCATTA
GCTGTTTCAGGAAATATTCGTACACCTGAAAACATCGAAAATGAAGAACTTCCTCTTGAT
CCAATTTCAAAAGATACAAAATCTGGTCTTTTACTTGAACGTGGTGATGTTTATAAAGAA
TTAAGACTTCGTGGTTATGATTATGCTGGTGTATTTAGAGGAATTAACAACAGTGATACT
CGTGCAAATGCTGGTGAACTAGAATGGGCTGATAATTGGGTTAGTTTTATGGACACAATG
TTGCAATTTTCAATTATGGGCAAAGACTTGCGTGAATTATATTTACCAACAAGAATCGAA
AGAGTCGTTTTGAATCCTACAAAACATTTAAAACTATTGGAAAAGTCAAAAGACCACGTT
GAATGCTATATGTATAAAGATATTAATGTTATTAAGAGTGGAGGTATTGAAATGAGAGGA
TTAAAGGCATCTCTCGCTCCAAGACGTTCAGGTTCACAAGCAGCACCGATATTGGAAAAA
TATACTTTCATTCCAAGCATCAATAATCGTGGAATTGGTGAAAATCTTGAAAAATCAAAG
CAATATGCCATTTCAGTTGCTACTCATGTTGTTCTTGAAAACAGCAATGGTGCTTTGAAA
TTAAAAGTTATCGAATATCTTGATGATCGTCTTGCAGAATCTTCAAATTCACTTCATATT
CAAAATGTGATTGAAAGTGAGCCAACATTAGCTAGTGATGTTGCAATTGCAACAATTCTC
AAACCTGATACATATCAAAATTTTGTTGGTGATTCAGGCATTCGTGTTGTAATTAAAGAT
GCAACAAAGGGAACTATTGAAAGCAATTGCCATCTTGCTGTTGCTTATGAGTTGCTTACA
ATTCAAAATGGAATGACAATTTTGAAAAATTTAAAAGAATCAATCAAAGAAGATGGATTT
ATTTTACTGGAAGAATCTCTTTCAGTATACAGTAAATTAATCAAGACTTTGACAAAGAAT
CCATTTGCTGATTTGAATCTGATTGTTGTTAGTGAGCAAATTGTGGACAATCGCATTTTT
GTCCTGTTGAGACAACCAATTAATTTTGATGAACGTGTCAAGCGAGTAGTCGTTGTAACT
GAGAAAAACTTTAGTTGGGTTGATGAAATTAAAGATGCGATGGTTGAAGCAGAGACTGGA
AAATACATTTATATTGTCTGTCAAGGAGAAGAATTCTTTGGTGCTGTTGGCATGATGAAT
TGTATTAAAAATGAAGCTGGTGGACGAATGGCAAGATTGGTCTTTATTCAAGACACAAAT
TCTCCTAAGTTTTCATTAACAAATCCCATTTATGTTGAACAATTGAAGAAAGATTTAGTG
CAAAATGTTTTAAAAAATGGAAATTGGGGAAGCTTCCGTCATTTGAAATTAAATGGTAGT
GCTGTACCGACATTGCCAGTTGAACATGCATATGTCAATGCTTTGACCAAAGGTGATTTA
GCTTCTCTTAAATGGATTGAAGGACCATTGTCACTTGAACAACCTGATTCAAGTGATGAA
CGTGTCGATCTTTGTACTGTCTATTATGCACCCATTAATTTCCGTGATGTCATGTTAAGT
TCTGGAAAATTGGCAGCTGATGCATTGCCTGGTGAATTAGCACAACAGGATTGTATTTTG
GGACTTGAATTCTCAGGTCGTGATTCAAAGGGTAGAAGAATAATGGCAATGGTACAAGCT
AAATCTCTTGCAACAACTTGTGTCGCTCAAAAAAATATGATGTGGGAAATTCCAGAGAAA
TGGACAATGGAAGAAGCAAGCACAATCCCTTGTGTTTACAGTACAGTTTATTATGCCTTG
GCCATTCGTGGAAAAATGAAGAAGGGAGAAAGCATTCTAATTCATGCGGGAAGCGGAGGT
GTAGGTCAAGCTGCAATTTCCGTTGCTCTTCATGCTGGTTTAACTGTTTACACAACCGTT
GGAAGCAAGGAAAAGCGTGAATATTTAAAGAAAACATTCCCTCAGTTAAATGACAGAAAT
ATAGGCAACTCGCGTGACACATCGTTCGAGCAAATGATAATGTGTGAAACAAAAGGCAAA
GGTGTTGATATCGTTTTAAATTCTTTGGCTGAAGAAAAATTGCAAGCATCAATTCGTTGT
CTTGGTCTTAATGGTCGTTTCCTAGAAATTGGAAAGTTTGATTTGAATCAAAACACTCCA
TTAGGAATGTCAGTTTTTCTTAAAAATACTTCATTCCATGGAATTTTACTTGACTCAGTT
ATGGAAGGTGATGATGAAACAATTAGTGAAGTTGTTAATTTAGTTGCTAATGGAATTAAA
AATGGAGCAGTTCGTCCACTTCAAACCACAGTTTTCAATGATCAACAAATTGAACAAGCA
TTTAGATTTATGGCATCTGGAAAGCATATTGGTAAAGTTGTCATTAAAGTTCGTGATGAA
GAGTCACAAAAAACTTTTCAACCTTCGATGAAGCTCATCAATGCTATATCACGTACATAT
ATGCATAAAGAGAAAACATATTTAATTGTTGGCGGTTTGGGTGGTTTTGGACTAGAATTA
TCAAATTGGCTGGTTACTCGTGGAGCAAAGAAAATCATTCTCACATCACGCAGCGGTGTC
AAAACAGGCTATCAATCATTAATGATCCGTCGTTGGACTGAAAAGGGCGTTCAAGTTGTC
ATTGATACAAATGATGTGACTACATTGAAAGGAGCTCAAAAATTACTAAAAGAAGCATCA
AAACTTGGAACAGTTGGCGGAATTTTTAATCTTGCTGCTGTTTTGCGTGATAATCTTCTT
GAAAATCTTACAGAAGCTGATTTCAAGGCAGTTTGTAAACCGAAAGTTGATGGAACAAAA
TATCTTGATGAAGCATCGCGTGAATTCTGTCCTGAACTTGATTATTTCATTTGCTTCTCA
AGTGTTTCATGCGGGCGTGGCAATATTGGTCAAATTAATTATGGTTTAGCTAATTCAGCT
ATGGAAAGAATTTGTGAAGCTCGTCAGCGAGTTGGCTTGCCTGGAACTTCTATTCAATGG
GGTGCAATTGGTGACACTGGTCTTGTTTTAGAAAATCTTGGTGATAATGATACAGTTGTA
GGTGGAACTTTACCTCAAAGAATGGTATCATGCTTACAAACAATGGATTTATTTATGCAA
CAACCACATGCTGTACTTGCATCAATGGTCGTTGCTGAGAAAAGAAAAGCTGATGCATCA
AGTGGAATGAGTTTAATTGCATGTATTGCAAATATTTTGGGATTAAAAGATACAAAGAAT
ATCAGTGATTCTGCAACACTTTCTGATTTGGGCCTTGATTCTCTTATGGGCGCAGAAATT
AAACAGACTTTAGAAAGAAACTTTGATTTGGTTATGAGTGCTCAGGAAATAAGACAGCTT
ACATTTGGTATGATTAAAGCAATGGAAGAAGGAACAACTGGAACGATTCCTTCAACCGAT
GAACCAACATCACCCGAACCTAAAGAAACTCAACAAACAGAAACAACTGCAACAACAACT
TCAATTACAATTGATAACATTCAAGAAAGTCATGGTCAACCAGTTGGTGATGGTACACAA
GTACAATTTGCAACAGAAATGATGCCAACACAATGCTTGCTTAAGATGAAATCAAAAGGC
GGTAAAAATTCACCAATTTTCCTTGTTCATCCAATTGAAGGAGTAGTGAGTGCATTGATT
CCTTTAGCTGAACGTTTAAATCGTCCAGTCTATGGTTTGCAATGTGTTTCTTATGCACCA
TTAGACTCAATATCAGAACTTGCAGCTTATTATATCAAACAAATCAGAAGTGTTCAATCA
ATTGGTCCATATACTATTGCTGGTTATTCTTATGGTGGTTGTGTTGCATTTGAAATGGTT
ACACAAATTGAAAAAGAAACAAATGAAAAATGCAATTTAATTATGCTCGATGGATCTCCC
ACATATGTCAGCTGGTATACTGGAGCACAAGTGCAACGAAATGCTGGCGGAAAATCACCA
ACACTTCAAAATAAAGCTAAAGATGAAGCTTATGCATTTGCTTACTTTGCAATGGTGTCT
GGCAATTTAGATTATAAATTGACTGCAACAGAACTTGAAAAGTTACCATCATTCGATGCT
CGACTTCAACGTGTAGCTGAAATGGTTCATGAAAAGACAAAATATCCTATTGATTTGATT
TCTGTGACAGCTAAAAGTTTCCTCAAAAAGCTTCTTGCTGCACACATCTACAAACCAACA
GGTAAAATTGATGCAAATGTGCTACTGATCAAACCAACGGAAAATTATGTAAAATTATCA
AATGACTATGGATTAACAGAGCTTTGCACAAAACCAGTGAAAATTGAAGTTATTCCTGGT
AATCATCGTACAATGTTAGCAGGTGACTCAGTGGAAAAAATCTCAAAACTCATAGAGAAG
ACAACATAA

>g4339.t1 Gene=g4339 Length=2502
MNSLINCEFSSIFSEICTALFDSLYIRLVSNIPNSQRKRFQNRKKSRRKNQEISNMPARF
EDLVTDTRRNAPSSVNMDLDMNERRFSHQRVVQDDICITGFSGRLPESSNIDEFKQNLFD
GVDMVNDDPRRWAAGLHDLPTRTGKIKHDDLQNLDAAFFKLHQKQAECMDPQLRMLLECT
YEAIIDAGINPQEIRGTRTGVYVGVSNSDSEEFWCRDPDVVNGYGLTGCARSMFANRISF
TFDFKGPSYAVDTACSSSLFAMDHAFRDIKSGRTDAAIVAGVGLIFKPTMSLQFKRLNML
SPDGMCKAFDESGNGYVRSDGCVVTFLQKSKDSRRIYATVLNVRTNTDGAKDQGITFPNG
QMQNRLIRETYEEIGLDPREVVYVEAHGTGTKVGDPQEVNSICDFFCKDRKTPLLIGSVK
SNMGHSEPASGVCSVAKILIAMEAGIIPGNLHYKNPNPDLYGIMDGRMKVVDRNMEWNGG
IIGLNSFGFGGANAHVILKSNPKPKAIGSIGEIPRVVACSGRTEEAINMMLNEIEANRND
EEFLGLINEIHSKNIPMHYYRGYTVMGADGSNQREIEECRDEKRPIWYIYSGMGSQWASM
AKEIMKVDAFRQAINKCADVLKPEGVDLIEILTKSDEAKFDNILNSFISIAAVQVALTDV
LTSLGISPDGMVGHSVGELGCAYADGCFTAEQTVLAAYWRGRSILDTDLIAGQMAAVGLT
WEECQKRLPKDVIAACHNGADSVTISGPVSSVDKVVKELSAEGIFAKAVKSSGIAFHSKY
IAEAAPKLRKSLDKIIPTPKTRSEKWISSSIPESSWSSPLAMHSSSAYHVNNLLSPVLFH
SAIQHVPSNAICIEIAPHGLLQAILKRSLNAECTNISLMKRQHTDNVQFLLSNVGKLYLA
GAQPQLAKLYRPITYPVGRSTPMLNSKIGWDHSQKWILLDVSKESSGETLVEVNLGKESD
AYLSGHAIDGRVLFPATGYMTLAWKTYAKMKGTTYDRLPVVLENVVFHRATILPKDGSVK
FGLNFFDGTGKFEICEGGSLAVSGNIRTPENIENEELPLDPISKDTKSGLLLERGDVYKE
LRLRGYDYAGVFRGINNSDTRANAGELEWADNWVSFMDTMLQFSIMGKDLRELYLPTRIE
RVVLNPTKHLKLLEKSKDHVECYMYKDINVIKSGGIEMRGLKASLAPRRSGSQAAPILEK
YTFIPSINNRGIGENLEKSKQYAISVATHVVLENSNGALKLKVIEYLDDRLAESSNSLHI
QNVIESEPTLASDVAIATILKPDTYQNFVGDSGIRVVIKDATKGTIESNCHLAVAYELLT
IQNGMTILKNLKESIKEDGFILLEESLSVYSKLIKTLTKNPFADLNLIVVSEQIVDNRIF
VLLRQPINFDERVKRVVVVTEKNFSWVDEIKDAMVEAETGKYIYIVCQGEEFFGAVGMMN
CIKNEAGGRMARLVFIQDTNSPKFSLTNPIYVEQLKKDLVQNVLKNGNWGSFRHLKLNGS
AVPTLPVEHAYVNALTKGDLASLKWIEGPLSLEQPDSSDERVDLCTVYYAPINFRDVMLS
SGKLAADALPGELAQQDCILGLEFSGRDSKGRRIMAMVQAKSLATTCVAQKNMMWEIPEK
WTMEEASTIPCVYSTVYYALAIRGKMKKGESILIHAGSGGVGQAAISVALHAGLTVYTTV
GSKEKREYLKKTFPQLNDRNIGNSRDTSFEQMIMCETKGKGVDIVLNSLAEEKLQASIRC
LGLNGRFLEIGKFDLNQNTPLGMSVFLKNTSFHGILLDSVMEGDDETISEVVNLVANGIK
NGAVRPLQTTVFNDQQIEQAFRFMASGKHIGKVVIKVRDEESQKTFQPSMKLINAISRTY
MHKEKTYLIVGGLGGFGLELSNWLVTRGAKKIILTSRSGVKTGYQSLMIRRWTEKGVQVV
IDTNDVTTLKGAQKLLKEASKLGTVGGIFNLAAVLRDNLLENLTEADFKAVCKPKVDGTK
YLDEASREFCPELDYFICFSSVSCGRGNIGQINYGLANSAMERICEARQRVGLPGTSIQW
GAIGDTGLVLENLGDNDTVVGGTLPQRMVSCLQTMDLFMQQPHAVLASMVVAEKRKADAS
SGMSLIACIANILGLKDTKNISDSATLSDLGLDSLMGAEIKQTLERNFDLVMSAQEIRQL
TFGMIKAMEEGTTGTIPSTDEPTSPEPKETQQTETTATTTSITIDNIQESHGQPVGDGTQ
VQFATEMMPTQCLLKMKSKGGKNSPIFLVHPIEGVVSALIPLAERLNRPVYGLQCVSYAP
LDSISELAAYYIKQIRSVQSIGPYTIAGYSYGGCVAFEMVTQIEKETNEKCNLIMLDGSP
TYVSWYTGAQVQRNAGGKSPTLQNKAKDEAYAFAYFAMVSGNLDYKLTATELEKLPSFDA
RLQRVAEMVHEKTKYPIDLISVTAKSFLKKLLAAHIYKPTGKIDANVLLIKPTENYVKLS
NDYGLTELCTKPVKIEVIPGNHRTMLAGDSVEKISKLIEKTT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
30 g4339.t1 CDD cd00833 PKS 94 498 1.47085E-164
31 g4339.t1 CDD cd05195 enoyl_red 1547 1835 3.18714E-109
29 g4339.t1 CDD cd08954 KR_1_FAS_SDR_x 1850 2092 1.3464E-91
21 g4339.t1 Gene3D G3DSA:3.40.47.10 - 91 516 2.1E-155
26 g4339.t1 Gene3D G3DSA:3.30.70.3290 - 517 937 3.3E-188
24 g4339.t1 Gene3D G3DSA:3.40.366.10 - 582 901 3.3E-188
27 g4339.t1 Gene3D G3DSA:3.10.129.110 - 947 1191 3.4E-84
20 g4339.t1 Gene3D G3DSA:3.40.50.720 - 1401 2091 0.0
23 g4339.t1 Gene3D G3DSA:3.90.180.10 - 1499 1859 0.0
22 g4339.t1 Gene3D G3DSA:1.10.1200.10 - 2097 2176 2.8E-17
25 g4339.t1 Gene3D G3DSA:3.40.50.1820 - 2243 2491 1.1E-73
28 g4339.t1 Gene3D G3DSA:1.10.1470.20 Fatty acid synthase; domain 2 2343 2437 1.1E-73
40 g4339.t1 MobiDBLite mobidb-lite consensus disorder prediction 2171 2198 -
39 g4339.t1 MobiDBLite mobidb-lite consensus disorder prediction 2172 2198 -
10 g4339.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 93 2487 0.0
11 g4339.t1 PANTHER PTHR43775:SF7 FATTY ACID SYNTHASE 93 2487 0.0
4 g4339.t1 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 94 332 4.3E-67
1 g4339.t1 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 337 453 2.4E-38
9 g4339.t1 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 456 565 5.5E-35
8 g4339.t1 Pfam PF00698 Acyl transferase domain 587 904 1.3E-78
3 g4339.t1 Pfam PF14765 Polyketide synthase dehydratase 941 1148 2.2E-19
5 g4339.t1 Pfam PF00107 Zinc-binding dehydrogenase 1660 1795 4.1E-16
2 g4339.t1 Pfam PF08659 KR domain 1866 2044 2.2E-48
6 g4339.t1 Pfam PF00550 Phosphopantetheine attachment site 2105 2157 8.5E-8
7 g4339.t1 Pfam PF00975 Thioesterase domain 2245 2500 1.2E-29
32 g4339.t1 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 246 262 -
41 g4339.t1 ProSiteProfiles PS50075 Carrier protein (CP) domain profile. 2099 2176 10.105
37 g4339.t1 SMART SM00825 Beta-ketoacyl synthase 96 503 1.1E-133
34 g4339.t1 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 589 883 2.3E-40
36 g4339.t1 SMART SM00826 PKS_DH 936 1095 0.0025
33 g4339.t1 SMART SM00829 PKS_ER_names_mod 1518 1835 1.2E-138
38 g4339.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1865 2046 2.7E-39
35 g4339.t1 SMART SM00823 Phosphopantetheine attachment site 2102 2160 1.5E-4
14 g4339.t1 SUPERFAMILY SSF53901 Thiolase-like 93 499 4.05E-72
13 g4339.t1 SUPERFAMILY SSF52151 FabD/lysophospholipase-like 586 871 1.31E-41
19 g4339.t1 SUPERFAMILY SSF55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase 712 769 4.32E-8
17 g4339.t1 SUPERFAMILY SSF50129 GroES-like 1544 1655 2.75E-13
16 g4339.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1621 1782 9.65E-38
15 g4339.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1862 2052 1.74E-32
18 g4339.t1 SUPERFAMILY SSF47336 ACP-like 2105 2162 4.06E-8
12 g4339.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 2223 2499 4.1E-51

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031177 phosphopantetheine binding MF
GO:0016746 acyltransferase activity MF
GO:0055114 NA NA
GO:0009058 biosynthetic process BP
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity MF
GO:0006633 fatty acid biosynthetic process BP
GO:0016740 transferase activity MF
GO:0004312 fatty acid synthase activity MF
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values