General information for g4362.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable proteasome subunit beta type-2.
Parent gene
- The parent gene g4362 is located on chr_2: 1575013..1577207 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4362 | g4362.t9 | TSS | g4362.t9 | 1574208 | 1574208 |
| chr_2 | g4362 | g4362.t9 | isoform | g4362.t9 | 1574272 | 1575013 |
| chr_2 | g4362 | g4362.t9 | exon | g4362.t9.exon1 | 1574272 | 1574795 |
| chr_2 | g4362 | g4362.t9 | cds | g4362.t9.CDS1 | 1574552 | 1574795 |
| chr_2 | g4362 | g4362.t9 | exon | g4362.t9.exon2 | 1574856 | 1575013 |
| chr_2 | g4362 | g4362.t9 | cds | g4362.t9.CDS2 | 1574856 | 1575013 |
| chr_2 | g4362 | g4362.t9 | TTS | g4362.t9 | 1575148 | 1575148 |
Sequences
>g4362.t9 Gene=g4362 Length=682
ATGGAGACCATTATCGGAATAAAAGGAAAAGATTTTGTTATGTTAGCTGCTGATAGCACT
CATCCACATTCAATTATGGTTCTCAAAGACGGTATATATTGATTAAAATTAAAGATTTTG
CAATAACCAAAATTTTACAATGATTCGGCAAAAATAACTTTTTCTAGATGAGAATAAAAT
TCACAAAATATCTGATTCTTTGCTTATTGCTGCTACTGGCGATCAAGGAGACACGGTTCA
GTTTGTTGAATACATCTCTAAAAATATTCTTTTATATAAAATGAGAAATGGATATGAACT
TGGTCCAAAGGCAGCAGCATATTTCACTCGTAAAAATCTGGCTGATTACTTAAGAACTCG
CTATGCTTATCAAGTTTGGTTGCTTGTTGCTGGTTACGATAAAAAAGAAGGTCCACAATT
AACATTCATTGATTATCTCGCAAATACTCTCTCCGTTAATCATGGAGCCCACGGTTATGG
TGGGATGTTTTGTGGAAGCATTTTTGACCAATATCATTATGAGAATATAACTCAAGATGA
AGCTTATGAAGTTATGCGAAAGTGTGCACGTGAAATTCAAAAGCGACTGATTATTTCTCA
ACAGAAATTCCATGTAACAGTTGTTGATGCTAATGGTGTTCGTAGATTGGATGATATCAC
AGCTGAAAATTTGAAGAATTAA
>g4362.t9 Gene=g4362 Length=133
MRNGYELGPKAAAYFTRKNLADYLRTRYAYQVWLLVAGYDKKEGPQLTFIDYLANTLSVN
HGAHGYGGMFCGSIFDQYHYENITQDEAYEVMRKCAREIQKRLIISQQKFHVTVVDANGV
RRLDDITAENLKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g4362.t9 | Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate | 1 | 131 | 0 |
| 2 | g4362.t9 | PANTHER | PTHR11599:SF6 | PROTEASOME SUBUNIT BETA TYPE-2 | 1 | 123 | 0 |
| 3 | g4362.t9 | PANTHER | PTHR11599 | PROTEASOME SUBUNIT ALPHA/BETA | 1 | 123 | 0 |
| 1 | g4362.t9 | Pfam | PF00227 | Proteasome subunit | 1 | 115 | 0 |
| 4 | g4362.t9 | SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 2 | 131 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051603 | proteolysis involved in cellular protein catabolic process | BP |
| GO:0004298 | threonine-type endopeptidase activity | MF |
| GO:0005839 | proteasome core complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
