General information for g4405.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative cysteine proteinase CG12163.
Parent gene
- The parent gene g4405 is located on chr_2: 2005157..2008641 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4405 | g4405.t11 | TTS | g4405.t11 | 2001061 | 2001061 |
| chr_2 | g4405 | g4405.t11 | isoform | g4405.t11 | 2001294 | 2002844 |
| chr_2 | g4405 | g4405.t11 | exon | g4405.t11.exon1 | 2001294 | 2001377 |
| chr_2 | g4405 | g4405.t11 | exon | g4405.t11.exon2 | 2001442 | 2001689 |
| chr_2 | g4405 | g4405.t11 | exon | g4405.t11.exon3 | 2001757 | 2002007 |
| chr_2 | g4405 | g4405.t11 | cds | g4405.t11.CDS1 | 2001850 | 2002007 |
| chr_2 | g4405 | g4405.t11 | exon | g4405.t11.exon4 | 2002083 | 2002844 |
| chr_2 | g4405 | g4405.t11 | cds | g4405.t11.CDS2 | 2002083 | 2002431 |
| chr_2 | g4405 | g4405.t11 | TSS | g4405.t11 | NA | NA |
Sequences
>g4405.t11 Gene=g4405 Length=1345
CATCCAATACTGATGATCATGACGATTTGATAAAAATACTTTCTGAACATTTGAAGAGAC
TCGATACTGGAAGTGATGCACAATTTGAATTGGTAAAACTTGAAAAGGTAACTCAACAAG
TAGTAGCTGGAATAAAATATAAAGCAACAGGTATTTTTAAAATTGGCAATGAAGAGAAAA
AATGTGTTATCGATGTATGGCATCGCTCATGGATTAAGGGAGATGAAGGCACTCAATTAA
GCGCTGATTGTGATAAAGGTGCAACAACTTTCAAGACAAAATCTTCTAGAAAAAGGAGAT
CAGTTCATCACCACACACACAATCGTCACAATAGACAATCAGTAAGCGATCATTTTGATG
ACCATCATCATCATACTGATAGACATCATCATCAATACTCAGCTACTGAAGAAATGAAAG
AAATAAAATCTGAAATTTTATTTAACAATTTCATAACTAAATATAATCGTAAATATGCCA
ATGAACTTGAACATAAAATGAGAATGAGAATTTTCAAGAAGAATTTACATAAAATTGAAA
TGTTGAATAAGCATGAACAAGGCACTGCAAAGTATGGAATTACAGAATTCGCTGATTTAA
CTGAAAAGGAATACTTGCATAAAACTGGTTTGAGAGTGCGTGAAAGACATGAGAATGAAT
TAGAAAATCCAATTGCACATATTCCAGAAGTTGAAGATTTACCAACCGAATTTGATTGGA
GAGATAAATCAGCAGTTACAAGTGTAAAAAATCAAGGAAATTTGTTACAGGAAATATTGA
AGGCTTACATGCTATTAAAACTGGAAAACTTGAAGCTTATTCTGAACAAGAACTTTTGGA
CTGTGATACAACTGATAATGCTTGCAATGGTGGTTATATGGATGATGCTTTTAAAGCAAT
TGAAAAAATTGGTGGTCTAGAATTAGAAGATGAATATCCTTATCAAGCAAGGAAACAAAA
GAAATGCTTGTTTAATGCTACTATGAGTCATGTTAAAGTTAAAGGTGTTGTAGATTTGCC
TAAAGGTGATGAAATTGCAATGCAAAAGTTTTTAGTCTCAACTGGTCCGATTTCCATTGG
CATAAATGCTAATGCTATGCAATTTTATCGTGGTGGTGTTTCGCATCCATGGAAAGTTCT
TTGCAGAAAATCTAATTTAGATCATGGTGTTTTGATTGTTGGATATGGAATAAAAGAGTA
TCCCATGTTTAATAAAACTTTACCTTATTGGACTATTAAAAATTCATGGGGTCCAAAATG
GGGTGAACAAGGATATTATCGAGTTTATCGTGGAGATAACAGTTGTGGAGTTGCAGAAAT
GGCAAGCAGCGCAGTACTTGAATAA
>g4405.t11 Gene=g4405 Length=168
MKEIKSEILFNNFITKYNRKYANELEHKMRMRIFKKNLHKIEMLNKHEQGTAKYGITEFA
DLTEKEYLHKTGLRVRERHENELENPIAHIPEVEDLPTEFDWRDKSAVTSVKNQGNLLQE
ILKAYMLLKLENLKLILNKNFWTVIQLIMLAMVVIWMMLLKQLKKLVV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g4405.t11 | Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 118 | 9.5E-27 |
| 2 | g4405.t11 | PANTHER | PTHR13814:SF16 | CYSTATIN | 9 | 114 | 8.7E-30 |
| 3 | g4405.t11 | PANTHER | PTHR13814 | FETUIN | 9 | 114 | 8.7E-30 |
| 1 | g4405.t11 | Pfam | PF08246 | Cathepsin propeptide inhibitor domain (I29) | 10 | 67 | 4.4E-13 |
| 9 | g4405.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 140 | - |
| 10 | g4405.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 141 | 160 | - |
| 8 | g4405.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 161 | 168 | - |
| 6 | g4405.t11 | SMART | SM00848 | Inhibitor_I29_2 | 10 | 67 | 3.0E-18 |
| 5 | g4405.t11 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 4 | 116 | 1.44E-26 |
| 4 | g4405.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 141 | 160 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
