General information for g4405.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative cysteine proteinase CG12163.
Parent gene
- The parent gene g4405 is located on chr_2: 2005157..2008641 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4405 | g4405.t29 | TTS | g4405.t29 | 2001061 | 2001061 |
| chr_2 | g4405 | g4405.t29 | isoform | g4405.t29 | 2002083 | 2002723 |
| chr_2 | g4405 | g4405.t29 | exon | g4405.t29.exon1 | 2002083 | 2002723 |
| chr_2 | g4405 | g4405.t29 | cds | g4405.t29.CDS1 | 2002084 | 2002431 |
| chr_2 | g4405 | g4405.t29 | TSS | g4405.t29 | NA | NA |
Sequences
>g4405.t29 Gene=g4405 Length=641
AGTAGCTGGAATAAAATATAAAGCAACAGGTATTTTTAAAATTGGCAATGAAGAGAAAAA
ATGTGTTATCGATGTATGGCATCGCTCATGGATTAAGGGAGATGAAGGCACTCAATTAAG
CGCTGATTGTGATAAAGGTGCAACAACTTTCAAGACAAAATCTTCTAGAAAAAGGAGATC
AGTTCATCACCACACACACAATCGTCACAATAGACAATCAGTAAGCGATCATTTTGATGA
CCATCATCATCATACTGATAGACATCATCATCAATACTCAGCTACTGAAGAAATGAAAGA
AATAAAATCTGAAATTTTATTTAACAATTTCATAACTAAATATAATCGTAAATATGCCAA
TGAACTTGAACATAAAATGAGAATGAGAATTTTCAAGAAGAATTTACATAAAATTGAAAT
GTTGAATAAGCATGAACAAGGCACTGCAAAGTATGGAATTACAGAATTCGCTGATTTAAC
TGAAAAGGAATACTTGCATAAAACTGGTTTGAGAGTGCGTGAAAGACATGAGAATGAATT
AGAAAATCCAATTGCACATATTCCAGAAGTTGAAGATTTACCAACCGAATTTGATTGGAG
AGATAAATCAGCAGTTACAAGTGTAAAAAATCAAGGAAATT
>g4405.t29 Gene=g4405 Length=116
MKEIKSEILFNNFITKYNRKYANELEHKMRMRIFKKNLHKIEMLNKHEQGTAKYGITEFA
DLTEKEYLHKTGLRVRERHENELENPIAHIPEVEDLPTEFDWRDKSAVTSVKNQGN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4405.t29 | Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 116 | 0 |
| 2 | g4405.t29 | PANTHER | PTHR13814:SF16 | CYSTATIN | 9 | 114 | 0 |
| 3 | g4405.t29 | PANTHER | PTHR13814 | FETUIN | 9 | 114 | 0 |
| 1 | g4405.t29 | Pfam | PF08246 | Cathepsin propeptide inhibitor domain (I29) | 10 | 67 | 0 |
| 5 | g4405.t29 | SMART | SM00848 | Inhibitor_I29_2 | 10 | 67 | 0 |
| 4 | g4405.t29 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 3 | 116 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed