General information for g4432.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ethanolamine-phosphate cytidylyltransferase.
Parent gene
- The parent gene g4432 is located on chr_2: 2134842..2140552 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4432 | g4432.t12 | isoform | g4432.t12 | 2133003 | 2136213 |
| chr_2 | g4432 | g4432.t12 | exon | g4432.t12.exon1 | 2133003 | 2133694 |
| chr_2 | g4432 | g4432.t12 | TTS | g4432.t12 | 2133011 | 2133011 |
| chr_2 | g4432 | g4432.t12 | cds | g4432.t12.CDS1 | 2133380 | 2133694 |
| chr_2 | g4432 | g4432.t12 | exon | g4432.t12.exon2 | 2133750 | 2134063 |
| chr_2 | g4432 | g4432.t12 | cds | g4432.t12.CDS2 | 2133750 | 2134063 |
| chr_2 | g4432 | g4432.t12 | exon | g4432.t12.exon3 | 2134415 | 2134497 |
| chr_2 | g4432 | g4432.t12 | cds | g4432.t12.CDS3 | 2134415 | 2134497 |
| chr_2 | g4432 | g4432.t12 | exon | g4432.t12.exon4 | 2134557 | 2134623 |
| chr_2 | g4432 | g4432.t12 | cds | g4432.t12.CDS4 | 2134557 | 2134623 |
| chr_2 | g4432 | g4432.t12 | exon | g4432.t12.exon5 | 2134773 | 2134885 |
| chr_2 | g4432 | g4432.t12 | cds | g4432.t12.CDS5 | 2134773 | 2134885 |
| chr_2 | g4432 | g4432.t12 | exon | g4432.t12.exon6 | 2135254 | 2135391 |
| chr_2 | g4432 | g4432.t12 | cds | g4432.t12.CDS6 | 2135254 | 2135391 |
| chr_2 | g4432 | g4432.t12 | exon | g4432.t12.exon7 | 2136161 | 2136213 |
| chr_2 | g4432 | g4432.t12 | cds | g4432.t12.CDS7 | 2136161 | 2136213 |
| chr_2 | g4432 | g4432.t12 | TSS | g4432.t12 | 2136415 | 2136415 |
Sequences
>g4432.t12 Gene=g4432 Length=1460
ATGTCTGATTCAACTAATCAAAAGAAGGAAGTTAGGGTTTGGATTGATGGATGTTATGAT
ATGGTGCATTTTGGACATGCTAATGCTTTACGTCAAGCAAAAGCCCTTGGAGATAAATTG
ATAGTCGGCATTCATAATGATGCAGAAATCACAAAACATAAAGGCCCGCCAGTATTTACA
CAAGAAGAAAGATATAAAATGATCAAGGGCATCAAATGGGTTGATGAAGTTGTTGAAGAT
GCACCATATGTAACAACTTTGGAAACGTTAAATAATTATAACTGCGACTTTTGTGTACAT
GGTGATGATATTACAACAACTGTTGATGGATTTGATACTTATCATCTTGTAAAAGAGGCA
AAGCGTTATAAAGAAATTTCCCGAACACAAGGTGTCTCTACTACTGATTTGGTTGGACGA
ATGCTTTTAATGACTCGCAATCATTTCCAGAAAGAACCTTCAAAATTGGGACAAGATCAT
GCTGCACGTTCGCCTTGGACAGGTTGTTCACAATTCCTTCCAACAACTCAGAAGATTAAT
CAATTCTCAGATGGAAAGCCCCCAGAACCAGGTGATAAGATTGTTTATGTAGCAGGTGCT
TTCGATTTGTTCCATATAGGCCACTTAGACTTTTTGGAGAAAGCTAAATCATTTGGCGAT
TTTCTAATTGTTGGACTTCATACTGATAATGTAGTAAATCAATATAAAGGTGGAAATTAT
CCAATTATGAATCTTCATGAGAGAGTATTGAGTGTTCTTGCTTGCAAGTATGTAAATGAA
GTTGTTATTGGAGCACCATACGAAGTAACCAAAGACTTGATGGAACATTTCAAAGTTGAT
GTTGTGTGTCATGGAAAAACTAAAATTTCAGACCAACACGGTGATCCATATGAAGTTCCA
AAGCAAATGGGCAAATTTAAAGTTGTTGATTCCGGTAATGAAATGACAACCGAAAAAATT
GTCCAAAGAATTATTCAAAATCGTCTAGAGTTTGAGAAACGCAACAATAAGAAAGAGGCC
AAAGAAGTTGCTATTTTTGAAGCAATGCAACGTACAACAAAAGTCGCAGAAAAGTGCGGA
TAAACACTAATCATGACATTTATTCATTTATTTTTTAAAGATATTTTTGACCTAAATTAT
GTATGGTTTTTAAAAGAATCTGCTTGTTGCTATAATAGCATTGTGTTATTAATTTATTTT
CTTTTGTTTATCATGTTTTTTTTTAAAGAAGCAATGATGCTTAATTTACATCAAAATATA
CAATTTATTTATCTGTTAATATGTACCTATCAAGTTATTTTTCTTTCTATGAAAAAACAT
GATTTTGTTAAAAAAAAATACTTAATTCTTAAATATAAACGTGAGAGCTTGTAGCTTACG
AAGAAACTGTAAATGTATTTATTACAAGACATATATTATATATCCCAATAAAATATTAAG
CTTACAAATGATAATTTTCT
>g4432.t12 Gene=g4432 Length=360
MSDSTNQKKEVRVWIDGCYDMVHFGHANALRQAKALGDKLIVGIHNDAEITKHKGPPVFT
QEERYKMIKGIKWVDEVVEDAPYVTTLETLNNYNCDFCVHGDDITTTVDGFDTYHLVKEA
KRYKEISRTQGVSTTDLVGRMLLMTRNHFQKEPSKLGQDHAARSPWTGCSQFLPTTQKIN
QFSDGKPPEPGDKIVYVAGAFDLFHIGHLDFLEKAKSFGDFLIVGLHTDNVVNQYKGGNY
PIMNLHERVLSVLACKYVNEVVIGAPYEVTKDLMEHFKVDVVCHGKTKISDQHGDPYEVP
KQMGKFKVVDSGNEMTTEKIVQRIIQNRLEFEKRNNKKEAKEVAIFEAMQRTTKVAEKCG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g4432.t12 | CDD | cd02174 | CCT | 9 | 155 | 0 |
| 12 | g4432.t12 | CDD | cd02173 | ECT | 191 | 339 | 0 |
| 8 | g4432.t12 | Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 163 | 0 |
| 7 | g4432.t12 | Gene3D | G3DSA:3.40.50.620 | HUPs | 166 | 331 | 0 |
| 3 | g4432.t12 | PANTHER | PTHR45780:SF2 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE | 5 | 352 | 0 |
| 4 | g4432.t12 | PANTHER | PTHR45780 | ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE | 5 | 352 | 0 |
| 2 | g4432.t12 | Pfam | PF01467 | Cytidylyltransferase-like | 15 | 138 | 0 |
| 1 | g4432.t12 | Pfam | PF01467 | Cytidylyltransferase-like | 197 | 306 | 0 |
| 5 | g4432.t12 | SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 11 | 141 | 0 |
| 6 | g4432.t12 | SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 193 | 324 | 0 |
| 9 | g4432.t12 | TIGRFAM | TIGR00125 | cyt_tran_rel: cytidyltransferase-like domain | 12 | 77 | 0 |
| 10 | g4432.t12 | TIGRFAM | TIGR00125 | cyt_tran_rel: cytidyltransferase-like domain | 194 | 261 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0009058 | biosynthetic process | BP |
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00967 (ethanolamine-phosphate cytidylyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
