Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolamine-phosphate cytidylyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4432 g4432.t14 isoform g4432.t14 2133003 2140552
chr_2 g4432 g4432.t14 exon g4432.t14.exon1 2133003 2133694
chr_2 g4432 g4432.t14 TTS g4432.t14 2133011 2133011
chr_2 g4432 g4432.t14 cds g4432.t14.CDS1 2133380 2133694
chr_2 g4432 g4432.t14 exon g4432.t14.exon2 2133750 2134063
chr_2 g4432 g4432.t14 cds g4432.t14.CDS2 2133750 2134063
chr_2 g4432 g4432.t14 exon g4432.t14.exon3 2134385 2134497
chr_2 g4432 g4432.t14 cds g4432.t14.CDS3 2134385 2134497
chr_2 g4432 g4432.t14 exon g4432.t14.exon4 2134557 2134623
chr_2 g4432 g4432.t14 cds g4432.t14.CDS4 2134557 2134623
chr_2 g4432 g4432.t14 exon g4432.t14.exon5 2134773 2134885
chr_2 g4432 g4432.t14 cds g4432.t14.CDS5 2134773 2134885
chr_2 g4432 g4432.t14 exon g4432.t14.exon6 2135254 2135391
chr_2 g4432 g4432.t14 cds g4432.t14.CDS6 2135254 2135391
chr_2 g4432 g4432.t14 TSS g4432.t14 2136415 2136415
chr_2 g4432 g4432.t14 exon g4432.t14.exon7 2140417 2140552
chr_2 g4432 g4432.t14 cds g4432.t14.CDS7 2140417 2140493

Sequences

>g4432.t14 Gene=g4432 Length=1573
ATGCGCGCAAAAAAAATTTTACAAATTTCAATATGGAAATTTAAATTCGTAATTTCCTAA
TGATTGCAATCAATGACGGGAACATAACTAAGCGTCGCCGTAATAACTTTTTAACACAAA
TCAAACACAGAAAACCTTATGATATGGTGCATTTTGGACATGCTAATGCTTTACGTCAAG
CAAAAGCCCTTGGAGATAAATTGATAGTCGGCATTCATAATGATGCAGAAATCACAAAAC
ATAAAGGCCCGCCAGTATTTACACAAGAAGAAAGATATAAAATGATCAAGGGCATCAAAT
GGGTTGATGAAGTTGTTGAAGATGCACCATATGTAACAACTTTGGAAACGTTAAATAATT
ATAACTGCGACTTTTGTGTACATGGTGATGATATTACAACAACTGTTGATGGATTTGATA
CTTATCATCTTGTAAAAGAGGCAAAGCGTTATAAAGAAATTTCCCGAACACAAGGTGTCT
CTACTACTGATTTGGTTGGACGAATGCTTTTAATGACTCGCAATCATTTCCAGAAAGGTG
ACTCAGAATATAGTGTTGGAAAAGATGAACCTTCAAAATTGGGACAAGATCATGCTGCAC
GTTCGCCTTGGACAGGTTGTTCACAATTCCTTCCAACAACTCAGAAGATTAATCAATTCT
CAGATGGAAAGCCCCCAGAACCAGGTGATAAGATTGTTTATGTAGCAGGTGCTTTCGATT
TGTTCCATATAGGCCACTTAGACTTTTTGGAGAAAGCTAAATCATTTGGCGATTTTCTAA
TTGTTGGACTTCATACTGATAATGTAGTAAATCAATATAAAGGTGGAAATTATCCAATTA
TGAATCTTCATGAGAGAGTATTGAGTGTTCTTGCTTGCAAGTATGTAAATGAAGTTGTTA
TTGGAGCACCATACGAAGTAACCAAAGACTTGATGGAACATTTCAAAGTTGATGTTGTGT
GTCATGGAAAAACTAAAATTTCAGACCAACACGGTGATCCATATGAAGTTCCAAAGCAAA
TGGGCAAATTTAAAGTTGTTGATTCCGGTAATGAAATGACAACCGAAAAAATTGTCCAAA
GAATTATTCAAAATCGTCTAGAGTTTGAGAAACGCAACAATAAGAAAGAGGCCAAAGAAG
TTGCTATTTTTGAAGCAATGCAACGTACAACAAAAGTCGCAGAAAAGTGCGGATAAACAC
TAATCATGACATTTATTCATTTATTTTTTAAAGATATTTTTGACCTAAATTATGTATGGT
TTTTAAAAGAATCTGCTTGTTGCTATAATAGCATTGTGTTATTAATTTATTTTCTTTTGT
TTATCATGTTTTTTTTTAAAGAAGCAATGATGCTTAATTTACATCAAAATATACAATTTA
TTTATCTGTTAATATGTACCTATCAAGTTATTTTTCTTTCTATGAAAAAACATGATTTTG
TTAAAAAAAAATACTTAATTCTTAAATATAAACGTGAGAGCTTGTAGCTTACGAAGAAAC
TGTAAATGTATTTATTACAAGACATATATTATATATCCCAATAAAATATTAAGCTTACAA
ATGATAATTTTCT

>g4432.t14 Gene=g4432 Length=378
MIAINDGNITKRRRNNFLTQIKHRKPYDMVHFGHANALRQAKALGDKLIVGIHNDAEITK
HKGPPVFTQEERYKMIKGIKWVDEVVEDAPYVTTLETLNNYNCDFCVHGDDITTTVDGFD
TYHLVKEAKRYKEISRTQGVSTTDLVGRMLLMTRNHFQKGDSEYSVGKDEPSKLGQDHAA
RSPWTGCSQFLPTTQKINQFSDGKPPEPGDKIVYVAGAFDLFHIGHLDFLEKAKSFGDFL
IVGLHTDNVVNQYKGGNYPIMNLHERVLSVLACKYVNEVVIGAPYEVTKDLMEHFKVDVV
CHGKTKISDQHGDPYEVPKQMGKFKVVDSGNEMTTEKIVQRIIQNRLEFEKRNNKKEAKE
VAIFEAMQRTTKVAEKCG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4432.t14 CDD cd02174 CCT 27 163 0
12 g4432.t14 CDD cd02173 ECT 209 357 0
8 g4432.t14 Gene3D G3DSA:3.40.50.620 HUPs 23 182 0
7 g4432.t14 Gene3D G3DSA:3.40.50.620 HUPs 184 349 0
3 g4432.t14 PANTHER PTHR45780:SF2 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 19 370 0
4 g4432.t14 PANTHER PTHR45780 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 19 370 0
1 g4432.t14 Pfam PF01467 Cytidylyltransferase-like 27 146 0
2 g4432.t14 Pfam PF01467 Cytidylyltransferase-like 215 324 0
6 g4432.t14 SUPERFAMILY SSF52374 Nucleotidylyl transferase 27 149 0
5 g4432.t14 SUPERFAMILY SSF52374 Nucleotidylyl transferase 211 342 0
10 g4432.t14 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 27 85 0
9 g4432.t14 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 212 279 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values