Gene loci information

Transcript annotation

  • This transcript has been annotated as Ethanolamine-phosphate cytidylyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4432 g4432.t7 isoform g4432.t7 2133003 2136213
chr_2 g4432 g4432.t7 exon g4432.t7.exon1 2133003 2133694
chr_2 g4432 g4432.t7 TTS g4432.t7 2133011 2133011
chr_2 g4432 g4432.t7 cds g4432.t7.CDS1 2133380 2133694
chr_2 g4432 g4432.t7 exon g4432.t7.exon2 2133750 2134063
chr_2 g4432 g4432.t7 cds g4432.t7.CDS2 2133750 2134063
chr_2 g4432 g4432.t7 exon g4432.t7.exon3 2134385 2134497
chr_2 g4432 g4432.t7 cds g4432.t7.CDS3 2134385 2134497
chr_2 g4432 g4432.t7 exon g4432.t7.exon4 2134557 2134623
chr_2 g4432 g4432.t7 cds g4432.t7.CDS4 2134557 2134623
chr_2 g4432 g4432.t7 exon g4432.t7.exon5 2134773 2134885
chr_2 g4432 g4432.t7 cds g4432.t7.CDS5 2134773 2134885
chr_2 g4432 g4432.t7 exon g4432.t7.exon6 2135254 2135391
chr_2 g4432 g4432.t7 cds g4432.t7.CDS6 2135254 2135391
chr_2 g4432 g4432.t7 exon g4432.t7.exon7 2136157 2136213
chr_2 g4432 g4432.t7 cds g4432.t7.CDS7 2136157 2136167
chr_2 g4432 g4432.t7 TSS g4432.t7 2136415 2136415

Sequences

>g4432.t7 Gene=g4432 Length=1494
ATGTCTGATTCAACTAATCAAAAGAAGGAAGTTAGGGTTTGGATTGATGGATGGTAATTA
TGATATGGTGCATTTTGGACATGCTAATGCTTTACGTCAAGCAAAAGCCCTTGGAGATAA
ATTGATAGTCGGCATTCATAATGATGCAGAAATCACAAAACATAAAGGCCCGCCAGTATT
TACACAAGAAGAAAGATATAAAATGATCAAGGGCATCAAATGGGTTGATGAAGTTGTTGA
AGATGCACCATATGTAACAACTTTGGAAACGTTAAATAATTATAACTGCGACTTTTGTGT
ACATGGTGATGATATTACAACAACTGTTGATGGATTTGATACTTATCATCTTGTAAAAGA
GGCAAAGCGTTATAAAGAAATTTCCCGAACACAAGGTGTCTCTACTACTGATTTGGTTGG
ACGAATGCTTTTAATGACTCGCAATCATTTCCAGAAAGGTGACTCAGAATATAGTGTTGG
AAAAGATGAACCTTCAAAATTGGGACAAGATCATGCTGCACGTTCGCCTTGGACAGGTTG
TTCACAATTCCTTCCAACAACTCAGAAGATTAATCAATTCTCAGATGGAAAGCCCCCAGA
ACCAGGTGATAAGATTGTTTATGTAGCAGGTGCTTTCGATTTGTTCCATATAGGCCACTT
AGACTTTTTGGAGAAAGCTAAATCATTTGGCGATTTTCTAATTGTTGGACTTCATACTGA
TAATGTAGTAAATCAATATAAAGGTGGAAATTATCCAATTATGAATCTTCATGAGAGAGT
ATTGAGTGTTCTTGCTTGCAAGTATGTAAATGAAGTTGTTATTGGAGCACCATACGAAGT
AACCAAAGACTTGATGGAACATTTCAAAGTTGATGTTGTGTGTCATGGAAAAACTAAAAT
TTCAGACCAACACGGTGATCCATATGAAGTTCCAAAGCAAATGGGCAAATTTAAAGTTGT
TGATTCCGGTAATGAAATGACAACCGAAAAAATTGTCCAAAGAATTATTCAAAATCGTCT
AGAGTTTGAGAAACGCAACAATAAGAAAGAGGCCAAAGAAGTTGCTATTTTTGAAGCAAT
GCAACGTACAACAAAAGTCGCAGAAAAGTGCGGATAAACACTAATCATGACATTTATTCA
TTTATTTTTTAAAGATATTTTTGACCTAAATTATGTATGGTTTTTAAAAGAATCTGCTTG
TTGCTATAATAGCATTGTGTTATTAATTTATTTTCTTTTGTTTATCATGTTTTTTTTTAA
AGAAGCAATGATGCTTAATTTACATCAAAATATACAATTTATTTATCTGTTAATATGTAC
CTATCAAGTTATTTTTCTTTCTATGAAAAAACATGATTTTGTTAAAAAAAAATACTTAAT
TCTTAAATATAAACGTGAGAGCTTGTAGCTTACGAAGAAACTGTAAATGTATTTATTACA
AGACATATATTATATATCCCAATAAAATATTAAGCTTACAAATGATAATTTTCT

>g4432.t7 Gene=g4432 Length=356
MDGNYDMVHFGHANALRQAKALGDKLIVGIHNDAEITKHKGPPVFTQEERYKMIKGIKWV
DEVVEDAPYVTTLETLNNYNCDFCVHGDDITTTVDGFDTYHLVKEAKRYKEISRTQGVST
TDLVGRMLLMTRNHFQKGDSEYSVGKDEPSKLGQDHAARSPWTGCSQFLPTTQKINQFSD
GKPPEPGDKIVYVAGAFDLFHIGHLDFLEKAKSFGDFLIVGLHTDNVVNQYKGGNYPIMN
LHERVLSVLACKYVNEVVIGAPYEVTKDLMEHFKVDVVCHGKTKISDQHGDPYEVPKQMG
KFKVVDSGNEMTTEKIVQRIIQNRLEFEKRNNKKEAKEVAIFEAMQRTTKVAEKCG

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g4432.t7 CDD cd02174 CCT 1 141 0
12 g4432.t7 CDD cd02173 ECT 187 335 0
8 g4432.t7 Gene3D G3DSA:3.40.50.620 HUPs 1 161 0
7 g4432.t7 Gene3D G3DSA:3.40.50.620 HUPs 162 327 0
3 g4432.t7 PANTHER PTHR45780:SF2 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 1 348 0
4 g4432.t7 PANTHER PTHR45780 ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE 1 348 0
2 g4432.t7 Pfam PF01467 Cytidylyltransferase-like 2 124 0
1 g4432.t7 Pfam PF01467 Cytidylyltransferase-like 193 302 0
6 g4432.t7 SUPERFAMILY SSF52374 Nucleotidylyl transferase 2 127 0
5 g4432.t7 SUPERFAMILY SSF52374 Nucleotidylyl transferase 189 320 0
10 g4432.t7 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 2 63 0
9 g4432.t7 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 190 257 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0009058 biosynthetic process BP
GO:0003824 catalytic activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values