Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Palmitoyl-protein thioesterase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g4457 g4457.t1 isoform g4457.t1 2689161 2689630
chr_2 g4457 g4457.t1 exon g4457.t1.exon1 2689161 2689177
chr_2 g4457 g4457.t1 cds g4457.t1.CDS1 2689161 2689177
chr_2 g4457 g4457.t1 exon g4457.t1.exon2 2689231 2689630
chr_2 g4457 g4457.t1 cds g4457.t1.CDS2 2689231 2689630
chr_2 g4457 g4457.t1 TSS g4457.t1 NA NA
chr_2 g4457 g4457.t1 TTS g4457.t1 NA NA

Sequences

>g4457.t1 Gene=g4457 Length=417
ATGATTGCATATCATAGAGTATTCCAAAATTCTTTAAGTCCGTTAACTTATTGGCATGAT
GATTTAAATGAGTTCCGTTATAAACGTGGAAGTTCCTTTCTAGCACATATAAATAATGAG
AATTATTATAATGCAGATTATGTGAAAAATTTACAAGAACTTAAACGACTTGTGCTCGTA
AAATACGTGAAAGATCTTTCTGTAATTCCAAACGAGTCAACGCAATTTGGTTTTCGGGAT
CACAATGGAAGGTCAATAAAACTCGAAGAGACAGATTTATTTCAGAATGATCGACTTGGT
TTGAAAAAGATGAAGCAAGATGGCAAATTAATATTGCTAGATGCACCATATGAACATTTA
GTATTAGATGAAAATTGGTTTAGAGAAAATATTGTGCCGATTCTTAAAGAAAATTAA

>g4457.t1 Gene=g4457 Length=138
MIAYHRVFQNSLSPLTYWHDDLNEFRYKRGSSFLAHINNENYYNADYVKNLQELKRLVLV
KYVKDLSVIPNESTQFGFRDHNGRSIKLEETDLFQNDRLGLKKMKQDGKLILLDAPYEHL
VLDENWFRENIVPILKEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g4457.t1 Gene3D G3DSA:3.40.50.1820 - 1 138 0
2 g4457.t1 PANTHER PTHR11247 PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 3 136 0
3 g4457.t1 PANTHER PTHR11247:SF8 PALMITOYL-PROTEIN THIOESTERASE 1 3 136 0
1 g4457.t1 Pfam PF02089 Palmitoyl protein thioesterase 3 119 0
4 g4457.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 3 135 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008474 palmitoyl-(protein) hydrolase activity MF
GO:0002084 protein depalmitoylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed