Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_2 | g4578 | g4578.t1 | isoform | g4578.t1 | 3286712 | 3295819 |
chr_2 | g4578 | g4578.t1 | exon | g4578.t1.exon1 | 3286712 | 3287304 |
chr_2 | g4578 | g4578.t1 | cds | g4578.t1.CDS1 | 3286712 | 3287304 |
chr_2 | g4578 | g4578.t1 | exon | g4578.t1.exon2 | 3287366 | 3290480 |
chr_2 | g4578 | g4578.t1 | cds | g4578.t1.CDS2 | 3287366 | 3290480 |
chr_2 | g4578 | g4578.t1 | exon | g4578.t1.exon3 | 3290549 | 3290628 |
chr_2 | g4578 | g4578.t1 | cds | g4578.t1.CDS3 | 3290549 | 3290628 |
chr_2 | g4578 | g4578.t1 | exon | g4578.t1.exon4 | 3295499 | 3295644 |
chr_2 | g4578 | g4578.t1 | cds | g4578.t1.CDS4 | 3295499 | 3295644 |
chr_2 | g4578 | g4578.t1 | exon | g4578.t1.exon5 | 3295710 | 3295819 |
chr_2 | g4578 | g4578.t1 | cds | g4578.t1.CDS5 | 3295710 | 3295819 |
chr_2 | g4578 | g4578.t1 | TSS | g4578.t1 | NA | NA |
chr_2 | g4578 | g4578.t1 | TTS | g4578.t1 | NA | NA |
>g4578.t1 Gene=g4578 Length=4044
ATGCGAGCTTTTTGTACCGTCAGCGCACCCCTAGAGGTTTGCGCTCCACCATCAAGACCG
CCATTACCATTACCTCCGCTTCCAGCAAATGCACGCTTTCTGGCTTTGAAACTATTCGGA
ACGCCACAATCACGCACTCTCTACTTCCTAGTCGAAGCAAAAAGTCGTGTACGAGAAGTT
TACGCACAAACATGTCATCATTTCTCAAAGCAAGGAATGCTGGACACCGAACTGTTCGGT
TTGGCAGTTCTCATAGATGGGGAGTATCTATTTGCAGATCCCGAGTCCAAACTATCAAAA
TACGGCCCAAAAAGTTGGCGATCATCGCACACTCATGGCCTTGATGCAAATGGCAAACCT
CTCTTAGAATTTCACTTCCGCGTACAATTTTATATTGAAAGTCCACTTATGTTAAGAGAT
GAAATTACGCGGCATCATTATTATTTACAACTCAAAACAAATGCAGTGGGTCGCGAAATT
CCAAAGGACTGTTCTGACCAATCACTGCTTCTACTTGGAGGTCTAGCACTTCAGGCTGAT
TTGGGCGATTGTCCCGATGATCAATCGACAACAGCTGCTGGATCTTCATCCACAGCAACC
TCATCAACAGATTATTTTCGAGCTGATGACTATATTCCATCAACACTACGTACCACGTGG
GGCATTTCAGCATTACATTCTTGCCATAGAGAAAATCGTGGAATGTCACGTGCAGATGCA
GAAACGCACTTCATACGCGAAGCATGTGGACTTCATGAGGCCATAAACGCTCACATTTTT
AGAATGAAAAGCAACAAAAGTGAAAACGGTGTTGGTTCAGTAATGTTAATTATATACGCT
AAAGGTCTAAAAATAGTTAATGAAACGTCACCACCTGTCACCTTTCTTTGGCCCTCAATT
AGCAAATTAAGTTTTGATCGTAAAAAGTTTGAACTGCGTTCGGGTGAAAATAAAATCACT
CTGTACTCAAGCAATGATGATAAAAACAAGATGCTGCTAGCACTTTGTCGAGAGACTCAT
CAATTTTCCATGAAAATTGCTCCACGTCTAACGGAAGCGATGAAACGAGAGGAGGAGGAA
AGTAATTGCATACACGCATGCTATCTATACTCGCGTGCACTTAACATGCAATATAAGAGT
AAAAACGATCAGAGAATTTCGGTCATATCGAGCACGAGCAGTAATACGACGTCGGGAATT
GTCAGCGATCGCGTGCATTCTGAAGATGAGCTAGAAATTCTTATCAATACTCCTCCTATA
GCGGCGCCATCCACAGAGAGTCTTGCACTCGCTCATTTGCTTGACTGCCCAAGTGTCTCA
CGTCAGACATCTTCAGTTGGTCAAGTTTCGCTCAAAGATATTGGCGACACATTTGCAGCA
CTTTCCATTCGATCAAATACTCGTTCAACAAGCAGTGAAGGAACAGAAACATTAAAAGAA
AAAACAAGCGAGAAAGATTGCGATGTATCGCCATCATCACAACACAATGTTGGTTCACAA
TGTTCATCAACATGCAGCACAGTTGTTGTTGTTAATTCACAGCAGTCACAATTCAATGGA
AGCAATCGTAGCAGTGAACGTAGACAATCTTCAACTTGCAGTAGCTTAGAATTAGGATTT
AGTCATACAGCTCAAAATTCAGCAGTCAGTGAGAGCACAAATAATGATAATCATCACTAT
GGCACAACAGATACACAAAATGATGATGAAGAAACAATTTCTGGAGTTTATGCACTTGAT
AATAATGCACCAACTGAAACAAGCGGAGTTTATACGATGAATAGCAGTGAAATGACTGGA
GAATCTTCAGAAATTGCTGAATCAGAGTCACATGAAAGTTCACATTATGGAAGTTTTCAT
CCAAATAGTGAAATGGGTGACAAACTTGTTGTCAACATAAACATCGATTCAGTTGATGGT
GATTTTCGGCAGAGATTAGATAGTGAAGTTGGTCGATTTAGAATGCGATCAGATTCAAAT
ATTAGTGCTGCTGGCTCATTTAGAGGCGATGGTAGTGATCCAACTGATAAGAAACATAAT
CCTTTAACTGCGGAAGAACTTACAGATTTGATTGTTGGTCGAGGAACTTATCCATCACGT
AAAACAGTCAGCGATACAATGGATTCAGATTGTGATTATGTCACATTGCCTATTCCATTA
GAAGGTGAAAGTTATTTGCAAGGAAGTGAAGATACTGCACCAACTGAAGATGAATATGAG
AAAGATTTATTAGAAGTCACCCCACCAGCACCACCTCAAAGAATTGATAGCATGTCATTG
TCAAATATTGTTGAAATGCCTCAACCACCGCCATATAATTCTCATCATGAAACAACTGGT
TTAAGAGGTCCTGATATTTCAAGTCCTGAACTTGCTTCAATTCCATTGCGTGATTCTCAA
ATTTATCCAAGAAAGTCATTGAGATCACTTTCTACAATCATTCCTCCAACAACAATTCCA
GAAGAAACTCCAGCACGTTTCATCACAACTCGTCCACATATTAATATACTTAAGGCTCAT
ACTACTTTAGTTGGAGAGAAACCAAGTTATGCAGCACCAACAGTCAATACTATCAACAAT
TTATCTCAATCGCCACTTCCTACAGCTACATCACTAGGTATTCCATATGTTCCCTACCAT
AATTTGCATGCAACGCACAAAACTCACTTGTCGCACTCACAATCAGCTTCTGCACCAAGA
ACTTGTGTATTGCTGCCAGTTATCAAACCACGCACGCAATCTTATGTTCCACCACCTATG
CAAACACATCGACAACCACCGCCACCACCTCCAACACAACCTCAATTAGCTACAGTCTAC
ACAAGCCAGCTTGCACGATCACAAATTGAACTTTATCAACAGCAATTATATAGTGATGTC
GATTATGTAATTTATCCATTACAAGATCCAGCTGTGAGTCAGCAAGAATATCTTGATTCA
AAACAAGGCTCAATTTTGGCGGCAATGGCACAAACACAACCGCCACCATATCTAGCATAT
CATACTGTTCGTGCACATAACAGAAGTTGGGATGGCAATCCTGCTATTTATCGTAGCACT
CCTTTCCTTTCGATGGCAATTTCATCACCATCACGTTACGCTTCAACACAGAATTTGTCT
GATACTTATGTACAATTGCCAGGCACATATTCACCACTTTACTCACCGTCTGTAGCAAGT
TTATGCTCATCATATGAACCACCGCCACCTTTACCGCCACTTAGACCACCGAGAATTACA
CAGAAAGCTACAAGCACACTCTCAACACCAACTAAACTATTTTCACGATCGAGATCAGAT
GATAATATTTTAAATTCGATAGATGATACACCACAATCAAAACGACGACCAATTCCAATA
CCACCGGCATATGAGAAGAAACCAATTAGGAAACCACCTATGCCTGCGCCCATTGAGAGC
TGTTTGGAACTTGCATCAACTCCACCATCAGTGCCTGCTAAACCATCAACATTGAAGACT
TCCTCCTCTTCATCAAGTATGAAATTGCAGTCAAAGTCTTCAACAAATCTCACAACCTGC
GTAGACACTCCAAAAATGGCAACATCAACAAGTCAGTCAACAACAACACCTGCAAAACCA
TTTGATTTGAAACTCTCACATGTCATTTGTCCCGAATCAAATCGAATAATTGCACCAGTC
AGTCTTCAACAGCAACTTGATATTAGCATCTTGCGTGAGAAAAGTCGAAATCTCGATTTG
CCATTAATTTCGGCTCTCTGCAATGATCGTTCCTTATTGAAGCAGACAAAAGCATTTGTG
CAACCAAAACAGCAACGTTCATCGCTTCAAAATAACAGCAGCTCAACTCTCTCATCCAAG
TCGAAATATCCTGTATCAGGACTTAGCACAACACAGCTCTCATCGACTACAAAGAGTCGT
AAGACTACAATAAGTCATCGACATCCACAAGATAAATTGCCACCTTTACCTGTAAGCAAC
AATAATAGTGCTGTAAAGAATAATTATGTAATGGATCCAATACCACTGAAACAAAAAACA
AATCAGCAAAATACAAATCTATAG
>g4578.t1 Gene=g4578 Length=1347
MRAFCTVSAPLEVCAPPSRPPLPLPPLPANARFLALKLFGTPQSRTLYFLVEAKSRVREV
YAQTCHHFSKQGMLDTELFGLAVLIDGEYLFADPESKLSKYGPKSWRSSHTHGLDANGKP
LLEFHFRVQFYIESPLMLRDEITRHHYYLQLKTNAVGREIPKDCSDQSLLLLGGLALQAD
LGDCPDDQSTTAAGSSSTATSSTDYFRADDYIPSTLRTTWGISALHSCHRENRGMSRADA
ETHFIREACGLHEAINAHIFRMKSNKSENGVGSVMLIIYAKGLKIVNETSPPVTFLWPSI
SKLSFDRKKFELRSGENKITLYSSNDDKNKMLLALCRETHQFSMKIAPRLTEAMKREEEE
SNCIHACYLYSRALNMQYKSKNDQRISVISSTSSNTTSGIVSDRVHSEDELEILINTPPI
AAPSTESLALAHLLDCPSVSRQTSSVGQVSLKDIGDTFAALSIRSNTRSTSSEGTETLKE
KTSEKDCDVSPSSQHNVGSQCSSTCSTVVVVNSQQSQFNGSNRSSERRQSSTCSSLELGF
SHTAQNSAVSESTNNDNHHYGTTDTQNDDEETISGVYALDNNAPTETSGVYTMNSSEMTG
ESSEIAESESHESSHYGSFHPNSEMGDKLVVNINIDSVDGDFRQRLDSEVGRFRMRSDSN
ISAAGSFRGDGSDPTDKKHNPLTAEELTDLIVGRGTYPSRKTVSDTMDSDCDYVTLPIPL
EGESYLQGSEDTAPTEDEYEKDLLEVTPPAPPQRIDSMSLSNIVEMPQPPPYNSHHETTG
LRGPDISSPELASIPLRDSQIYPRKSLRSLSTIIPPTTIPEETPARFITTRPHINILKAH
TTLVGEKPSYAAPTVNTINNLSQSPLPTATSLGIPYVPYHNLHATHKTHLSHSQSASAPR
TCVLLPVIKPRTQSYVPPPMQTHRQPPPPPPTQPQLATVYTSQLARSQIELYQQQLYSDV
DYVIYPLQDPAVSQQEYLDSKQGSILAAMAQTQPPPYLAYHTVRAHNRSWDGNPAIYRST
PFLSMAISSPSRYASTQNLSDTYVQLPGTYSPLYSPSVASLCSSYEPPPPLPPLRPPRIT
QKATSTLSTPTKLFSRSRSDDNILNSIDDTPQSKRRPIPIPPAYEKKPIRKPPMPAPIES
CLELASTPPSVPAKPSTLKTSSSSSSMKLQSKSSTNLTTCVDTPKMATSTSQSTTTPAKP
FDLKLSHVICPESNRIIAPVSLQQQLDISILREKSRNLDLPLISALCNDRSLLKQTKAFV
QPKQQRSSLQNNSSSTLSSKSKYPVSGLSTTQLSSTTKSRKTTISHRHPQDKLPPLPVSN
NNSAVKNNYVMDPIPLKQKTNQQNTNL
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
11 | g4578.t1 | CDD | cd17101 | FERM_F1_PTPN13_like | 32 | 134 | 1.56058E-34 |
10 | g4578.t1 | CDD | cd14473 | FERM_B-lobe | 143 | 251 | 1.64419E-7 |
12 | g4578.t1 | CDD | cd13185 | FERM_C_FRMD1_FRMD6 | 253 | 354 | 7.99445E-42 |
9 | g4578.t1 | Gene3D | G3DSA:1.20.80.10 | - | 129 | 252 | 4.5E-22 |
8 | g4578.t1 | Gene3D | G3DSA:2.30.29.30 | - | 257 | 342 | 1.5E-10 |
18 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 494 | - |
15 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 488 | - |
23 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 535 | - |
24 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 569 | - |
20 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 617 | - |
19 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1132 | - |
22 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1112 | - |
16 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1132 | - |
26 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1146 | 1178 | - |
25 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1178 | - |
17 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1259 | 1322 | - |
21 | g4578.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1259 | 1300 | - |
3 | g4578.t1 | PANTHER | PTHR13429:SF10 | PROTEIN EXPANDED | 1 | 1344 | 0.0 |
4 | g4578.t1 | PANTHER | PTHR13429 | FERM DOMAIN (PROTEIN4.1-EZRIN-RADIXIN-MOESIN) FAMILY | 1 | 1344 | 0.0 |
2 | g4578.t1 | Pfam | PF00373 | FERM central domain | 137 | 258 | 1.8E-14 |
1 | g4578.t1 | Pfam | PF09380 | FERM C-terminal PH-like domain | 273 | 348 | 1.2E-11 |
27 | g4578.t1 | ProSiteProfiles | PS50057 | FERM domain profile. | 32 | 347 | 48.707 |
14 | g4578.t1 | SMART | SM00295 | B41_5 | 30 | 259 | 1.1E-30 |
13 | g4578.t1 | SMART | SM01196 | FERM_C_3 | 268 | 351 | 1.6E-19 |
6 | g4578.t1 | SUPERFAMILY | SSF54236 | Ubiquitin-like | 46 | 133 | 1.05E-5 |
7 | g4578.t1 | SUPERFAMILY | SSF47031 | Second domain of FERM | 133 | 251 | 7.33E-19 |
5 | g4578.t1 | SUPERFAMILY | SSF50729 | PH domain-like | 256 | 386 | 2.43E-17 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005856 | cytoskeleton | CC |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.