General information for g4607.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Beta-1,3-glucan-binding protein.
Parent gene
- The parent gene g4607 is located on chr_2: 3483228..3484745 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4607 | g4607.t1 | isoform | g4607.t1 | 3483228 | 3484745 |
| chr_2 | g4607 | g4607.t1 | exon | g4607.t1.exon1 | 3483228 | 3483554 |
| chr_2 | g4607 | g4607.t1 | cds | g4607.t1.CDS1 | 3483228 | 3483554 |
| chr_2 | g4607 | g4607.t1 | exon | g4607.t1.exon2 | 3483623 | 3484076 |
| chr_2 | g4607 | g4607.t1 | cds | g4607.t1.CDS2 | 3483623 | 3484076 |
| chr_2 | g4607 | g4607.t1 | exon | g4607.t1.exon3 | 3484278 | 3484429 |
| chr_2 | g4607 | g4607.t1 | cds | g4607.t1.CDS3 | 3484278 | 3484429 |
| chr_2 | g4607 | g4607.t1 | exon | g4607.t1.exon4 | 3484521 | 3484745 |
| chr_2 | g4607 | g4607.t1 | cds | g4607.t1.CDS4 | 3484521 | 3484745 |
| chr_2 | g4607 | g4607.t1 | TSS | g4607.t1 | NA | NA |
| chr_2 | g4607 | g4607.t1 | TTS | g4607.t1 | NA | NA |
Sequences
>g4607.t1 Gene=g4607 Length=1158
ATGGCAATAAAAGAATTCAATCTTCTCATTCTATTAACACTCGTAACTATCCATGCGACA
CGTGGAGCAATCACTAAATGTGAGAAAAGCACCACTATCACAAGTGGATCTAAAGCTGTG
AATGAGAAAAAAGTTTGCTCTGGCGATTTAATATTTGAAGAGAGTTTTGATGGTATTCTC
GACTTGGATATATGGCATCATGATAGCACATTTACAGGCGATACGCTTCATGAGTTTCAA
TGGTATACAAACAATCGTTCAAATTCATTCGTTGAAGATGGAAATTTAAATCTTCGACCG
ACACTCACTGCAGATGATTTTGGTGAATATTTTCTCTATTCTGGTACACTTGATTTACAT
GGAGCACCAAATGAATGGTGTACAAATGCTGCAAACTCTGGATGTATTCGAAGTGGAAGT
CATGAGAACATCCTAAATCCGATCAAGAGCGCAAGATTACGAACTTTGAACTCGTTTGCT
TTCAAATATGGCAAAGTGGAAATTCAAGCAAAATTACCAAGTGGTGATTGGCTTTTGCCA
TCTATCAAATTTCTTCCACTTCGAAATGCTTATGGACGATTTCCTGCAAGTGGTGAAATT
GATTTGCTCGAGGCTCGTGGCAATCGTGATTTAATCAAAAATAGCGTTAACATTGGTAAC
GAACAGATAACGTCAACATTACATTTTGGCCCACATTCAGAAGCAGATGCGTGGCAATCA
ACATCATTCACACGTAATAGCAATGATAAGAGCAAAACTTTTGCCAATAGCTTTCATCGT
TATCAAATGGAATGGACGAGTGATAAAATTACTTTTAGTGTTGATGACATTGAAACTGGA
ACAATAAAAGCAAAAAATGGTTTTTGGGAAAAGTATGAATTTGAGACAAAATATCCAGGC
ACGCATAATCCATGGTTTAGTGGAACAAAAATTGCTCCCTTTGATCAAGAATTTTATTTA
TCTATTGGACTCGCAGTCGGTGGTTCGCACTTTTTTAATGATGATATTGGTGATAAACCA
TGGAGCAATAGTTCATTGACAGCTGCACGAGACTTTTGGCAAGCACGCAACGAGTGGTTG
CCTACATGGAAAATCAATGAAAATCGTACAAAAGAAGCTTCATTTTTGATCGATTATATT
CGTATATGGGCATTGTAA
>g4607.t1 Gene=g4607 Length=385
MAIKEFNLLILLTLVTIHATRGAITKCEKSTTITSGSKAVNEKKVCSGDLIFEESFDGIL
DLDIWHHDSTFTGDTLHEFQWYTNNRSNSFVEDGNLNLRPTLTADDFGEYFLYSGTLDLH
GAPNEWCTNAANSGCIRSGSHENILNPIKSARLRTLNSFAFKYGKVEIQAKLPSGDWLLP
SIKFLPLRNAYGRFPASGEIDLLEARGNRDLIKNSVNIGNEQITSTLHFGPHSEADAWQS
TSFTRNSNDKSKTFANSFHRYQMEWTSDKITFSVDDIETGTIKAKNGFWEKYEFETKYPG
THNPWFSGTKIAPFDQEFYLSIGLAVGGSHFFNDDIGDKPWSNSSLTAARDFWQARNEWL
PTWKINENRTKEASFLIDYIRIWAL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4607.t1 | PANTHER | PTHR10963:SF55 | EXTRACELLULAR AGARASE | 21 | 384 | 2.3E-79 |
| 3 | g4607.t1 | PANTHER | PTHR10963 | GLYCOSYL HYDROLASE-RELATED | 21 | 384 | 2.3E-79 |
| 1 | g4607.t1 | Pfam | PF00722 | Glycosyl hydrolases family 16 | 148 | 288 | 9.7E-15 |
| 8 | g4607.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 9 | g4607.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 7 | - |
| 10 | g4607.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 8 | 17 | - |
| 11 | g4607.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
| 7 | g4607.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 385 | - |
| 6 | g4607.t1 | ProSiteProfiles | PS51762 | Glycosyl hydrolases family 16 (GH16) domain profile. | 77 | 385 | 23.348 |
| 4 | g4607.t1 | SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 41 | 384 | 5.17E-56 |
| 5 | g4607.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K20697 (gram-negative bacteria-binding protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed