General information for g4629.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Juvenile hormone acid O-methyltransferase.
Parent gene
- The parent gene g4629 is located on chr_2: 3790953..3791920 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4629 | g4629.t1 | isoform | g4629.t1 | 3790953 | 3791920 |
| chr_2 | g4629 | g4629.t1 | exon | g4629.t1.exon1 | 3790953 | 3791335 |
| chr_2 | g4629 | g4629.t1 | cds | g4629.t1.CDS1 | 3790953 | 3791335 |
| chr_2 | g4629 | g4629.t1 | exon | g4629.t1.exon2 | 3791394 | 3791674 |
| chr_2 | g4629 | g4629.t1 | cds | g4629.t1.CDS2 | 3791394 | 3791674 |
| chr_2 | g4629 | g4629.t1 | exon | g4629.t1.exon3 | 3791742 | 3791920 |
| chr_2 | g4629 | g4629.t1 | cds | g4629.t1.CDS3 | 3791742 | 3791920 |
| chr_2 | g4629 | g4629.t1 | TSS | g4629.t1 | NA | NA |
| chr_2 | g4629 | g4629.t1 | TTS | g4629.t1 | NA | NA |
Sequences
>g4629.t1 Gene=g4629 Length=843
ATGAATAACGCAAACCTTTATAAAAAATCAAATGTATTACAGAAGCGTGATGCAAAAGAA
ATAATTGAAGAGTTTTCAAGTATTTTTAATTGGAAATGGGATGGATCATCTGATGCTCTC
TTAGATATCGGTTGTGGGTCCGGAGATGTTCTCTATGAGCTCATATTACCAAAAATCCCA
ATTAACATTGAAGTAATCGGGATTGACATCTCAAAAGAGATGATAAAATACGCAAATGAA
CATTACGGAAATGAGTATCTCAAGTTTTACAAAGTGGACATTGAAAGTGAGATGTTTATA
GATGGAAAAACGACTCCTATTAAACCCGAGAGCTTCAATTTCATCACCTCATTCTATGCT
TTACATTGGATACAAAACCAAAGGCAAGCATTATCGAATATCCACAAATTACTTAAACCA
AATGGCACTTGCTTGTTAGTATTTCTTGTCTCGAATCCTATTTATGATGTATACACACAT
CTTTCAAGAATGAAGAAATATTCGAGATATATGAGTGACGTGGAAAAATTTATTAGTCCA
TATCACTATGAAGAGAAACCACTGGAGGTCTTTGAGTCGACACTTACACATGTTGGCTTC
AAAATATCTCACATTGAAATCAGGGATCAAATATTCATTTATGAAAATGTGGATTTGCTA
AAATATTCTGTTGCTGCTGTCAATCCTTTTACTAAAAGAATGCCAGAAAGTCTTCAGAAT
GAATTCCTAAATGATTATGTGAAGAAAATTGATGATCTAAATTTGATACGATTCAATGAG
AATACATTTACAAAAGATGTCTTTACACCTTACAAGTTGATGATTGCAGTTATTAATAAA
TAG
>g4629.t1 Gene=g4629 Length=280
MNNANLYKKSNVLQKRDAKEIIEEFSSIFNWKWDGSSDALLDIGCGSGDVLYELILPKIP
INIEVIGIDISKEMIKYANEHYGNEYLKFYKVDIESEMFIDGKTTPIKPESFNFITSFYA
LHWIQNQRQALSNIHKLLKPNGTCLLVFLVSNPIYDVYTHLSRMKKYSRYMSDVEKFISP
YHYEEKPLEVFESTLTHVGFKISHIEIRDQIFIYENVDLLKYSVAAVNPFTKRMPESLQN
EFLNDYVKKIDDLNLIRFNENTFTKDVFTPYKLMIAVINK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4629.t1 | CDD | cd02440 | AdoMet_MTases | 40 | 150 | 0 |
| 5 | g4629.t1 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 3 | 249 | 0 |
| 2 | g4629.t1 | PANTHER | PTHR43464 | METHYLTRANSFERASE | 3 | 257 | 0 |
| 3 | g4629.t1 | PANTHER | PTHR43464:SF23 | JUVENILE HORMONE ACID O-METHYLTRANSFERASE | 3 | 257 | 0 |
| 1 | g4629.t1 | Pfam | PF13847 | Methyltransferase domain | 37 | 150 | 0 |
| 4 | g4629.t1 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 6 | 246 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10718 (juvenile hormone-III synthase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed