General information for g4630.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Juvenile hormone acid O-methyltransferase.
Parent gene
- The parent gene g4630 is located on chr_2: 3792606..3793601 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4630 | g4630.t1 | isoform | g4630.t1 | 3792606 | 3793601 |
| chr_2 | g4630 | g4630.t1 | exon | g4630.t1.exon1 | 3792606 | 3792976 |
| chr_2 | g4630 | g4630.t1 | cds | g4630.t1.CDS1 | 3792606 | 3792976 |
| chr_2 | g4630 | g4630.t1 | exon | g4630.t1.exon2 | 3793096 | 3793376 |
| chr_2 | g4630 | g4630.t1 | cds | g4630.t1.CDS2 | 3793096 | 3793376 |
| chr_2 | g4630 | g4630.t1 | exon | g4630.t1.exon3 | 3793432 | 3793601 |
| chr_2 | g4630 | g4630.t1 | cds | g4630.t1.CDS3 | 3793432 | 3793601 |
| chr_2 | g4630 | g4630.t1 | TSS | g4630.t1 | NA | NA |
| chr_2 | g4630 | g4630.t1 | TTS | g4630.t1 | NA | NA |
Sequences
>g4630.t1 Gene=g4630 Length=822
ATGAATAACAGTGATTTATATTTAAGGAATAATGACGTACAGAGACGTGATTCTAGTGAT
CTTTTAGATGAGTTCTCGCATTACTTTAAATGGCGTTATGATAGATTTGACAACTTACTT
GATATCGGTTGCGGACCAGGGGATGTGTTGTTCGATTTTACTCTACAAAAAATACCAGAA
AATTTTCACAAAATTGTAGGCATAGATATTTCAAACGAGATGCTTAATTATGCAAGAGAA
AATTTTGGCAATGAATTTATCGAGTTCCATCGTGTTGATATCTCAGAAATTTCAGCATTC
CAACGCCTTGACAATCAACAATTTGACAACATCACCTCATTTTATTGTCTTCATTGGATT
CAGAATCAAAAACAAGTATTCGCCAATATACAAAAGCTTCTCAGTAAAGATGGCACAGCA
ATAATTGCGTTTCTCACTTATACACCACTTTTTGATATATACGAAAGGCTCTCGAGAATG
AACAAATACAAACAATTCATGAGTGATGTTAAAAATTTTATTTCACCATATCATTATGAA
AAACGACCATTGGATGTTGTCAAGAGCTATTGTAATGAAAATGGATTGATTGTCAAACAT
ATTGAGTTGAGAGAAAAGACATTTTATTATCAAAATTATTCCCATTTAAAAGATGCAGTT
GAATCAATCAATCCATTTACAAAAAGAATGCCGAAGAAATTAGCTAAATATTTCATCAAT
GACTATGTAAAATTGGTAAAAGAAATCACCGAAAATCGTTTCAATAATGATGAAAAAATA
ATTTCTCGTTATAAATTGCTTATAGCTGTTTTGACCAAATAA
>g4630.t1 Gene=g4630 Length=273
MNNSDLYLRNNDVQRRDSSDLLDEFSHYFKWRYDRFDNLLDIGCGPGDVLFDFTLQKIPE
NFHKIVGIDISNEMLNYARENFGNEFIEFHRVDISEISAFQRLDNQQFDNITSFYCLHWI
QNQKQVFANIQKLLSKDGTAIIAFLTYTPLFDIYERLSRMNKYKQFMSDVKNFISPYHYE
KRPLDVVKSYCNENGLIVKHIELREKTFYYQNYSHLKDAVESINPFTKRMPKKLAKYFIN
DYVKLVKEITENRFNNDEKIISRYKLLIAVLTK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g4630.t1 | CDD | cd02440 | AdoMet_MTases | 38 | 147 | 0 |
| 5 | g4630.t1 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 31 | 273 | 0 |
| 2 | g4630.t1 | PANTHER | PTHR43464 | METHYLTRANSFERASE | 4 | 250 | 0 |
| 3 | g4630.t1 | PANTHER | PTHR43464:SF23 | JUVENILE HORMONE ACID O-METHYLTRANSFERASE | 4 | 250 | 0 |
| 1 | g4630.t1 | Pfam | PF13847 | Methyltransferase domain | 38 | 146 | 0 |
| 4 | g4630.t1 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 4 | 208 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed