General information for g4700.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g4700 is located on chr_2: 4264269..4265522 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g4700 | g4700.t7 | TTS | g4700.t7 | 4263286 | 4263286 |
| chr_2 | g4700 | g4700.t7 | isoform | g4700.t7 | 4263312 | 4264581 |
| chr_2 | g4700 | g4700.t7 | exon | g4700.t7.exon1 | 4263312 | 4263359 |
| chr_2 | g4700 | g4700.t7 | cds | g4700.t7.CDS1 | 4263312 | 4263359 |
| chr_2 | g4700 | g4700.t7 | exon | g4700.t7.exon2 | 4263577 | 4264444 |
| chr_2 | g4700 | g4700.t7 | cds | g4700.t7.CDS2 | 4263577 | 4263885 |
| chr_2 | g4700 | g4700.t7 | exon | g4700.t7.exon3 | 4264506 | 4264581 |
| chr_2 | g4700 | g4700.t7 | TSS | g4700.t7 | 4264632 | 4264632 |
Sequences
>g4700.t7 Gene=g4700 Length=992
ATGGAAGAAGATGATCAACCAAGACAGCCAAGACAGCCTCACAACTATCAGGCTTTATTA
AAATTCGCAATGGAAGCAACAAAAGATGAAGATCGAACAGAACCATCACGTTTTGAACAA
ATGGATCCTGAAAGAAGGAGATTCTTAGAAGAAGCATTAAAATCACTTACAGTAGATGTA
ATAGAAGAACTCAATAAAGCCATGGACATTTTAATCAAAGCTGAAGCAAATGAAGAAGAA
CAAGTGCATGCTCTCGAAGTCGTGACTAATTTTGTTGCTGATATTGATACCGCCAATGGT
ATGATTTTATTACTACTAAAGAATATAATTTATATTTTATTATTGTACACGTTTCAGATT
TTTTCAAAATCGGTGGCTTTTGTATTCTTTTGCCTTGTCTCAATTCAAAATATTCTGAAG
TGAGAAGTGGAACAGCAGAATTGATTGCTGAACTTGCACAAAATAATCCATTCTGTCAAA
AACATTTATTAGATCTCGAAGTACTGCCAAAATTAATTGAACTTCTCTCAGATGAACCAG
AAATCGCTTCACACTCATTCCATGCCATTTCTTGTCTCGTGAGAAGCTATGAACCAGGCT
TGGCGAGTTTTATTGAAATTGGTGGACTAGAGTGCATGTTGGGACTTATTCAATGCAAAG
ATCAAGAGAAACTCGTGATAAAATCAATGTTTCTTATTTCATCATTCTCAAAAGATTTTC
CACCAGTTCGTGATGAGCTTGTTAAACTTAATGCAATTGAAAGAATAACAACAATTCTCG
AACCAAAATCAGACTATGACACACTCTTGGAGCAAAGTTTGTCTGCACTTTCTTCACTTA
TTGAAACAGAAGATGCAATTCAAAGATGTCGCAATAGCACGATAAATTTACGAGAAAAAC
TCGAGAAAATAATTCTCGCGGGAAAAGGAAAAGAAGAGTGTCAAGAACAAGTTGAATACA
GTCAAGCATTGATTGGAAAGATTTTTAAATAA
>g4700.t7 Gene=g4700 Length=118
MLGLIQCKDQEKLVIKSMFLISSFSKDFPPVRDELVKLNAIERITTILEPKSDYDTLLEQ
SLSALSSLIETEDAIQRCRNSTINLREKLEKIILAGKGKEECQEQVEYSQALIGKIFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g4700.t7 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 118 | 0 |
| 1 | g4700.t7 | SUPERFAMILY | SSF48371 | ARM repeat | 4 | 117 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
